Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J15
         (270 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59268-1|CAA41958.1|  316|Homo sapiens IIB protein protein.           127   7e-30
M76766-1|AAA61149.1|  316|Homo sapiens transcription factor prot...   127   7e-30
BC021000-1|AAH21000.1|  316|Homo sapiens general transcription f...   127   7e-30
BC020597-1|AAH20597.1|  316|Homo sapiens general transcription f...   127   7e-30
AL445991-4|CAI41341.1|  316|Homo sapiens general transcription f...   127   7e-30
AL445991-3|CAI41342.1|  224|Homo sapiens general transcription f...   125   3e-29
S44184-1|AAB23144.1|  311|Homo sapiens S300-II protein.               120   1e-27
AL445991-5|CAI41343.1|  231|Homo sapiens general transcription f...   109   1e-24
BC104208-1|AAI04209.1|  211|Homo sapiens LOC147650 protein protein.    28   6.1  

>X59268-1|CAA41958.1|  316|Homo sapiens IIB protein protein.
          Length = 316

 Score =  127 bits (306), Expect = 7e-30
 Identities = 61/85 (71%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
 Frame = +2

Query: 17  MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 193
           MASTSR++   +V C  HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1   MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60

Query: 194 GVDPFCVGGPENPL*SGGDLSTIIG 268
             DP  VG  +NPL S GDLST+IG
Sbjct: 61  TKDPSRVGDSQNPLLSDGDLSTMIG 85


>M76766-1|AAA61149.1|  316|Homo sapiens transcription factor
           protein.
          Length = 316

 Score =  127 bits (306), Expect = 7e-30
 Identities = 61/85 (71%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
 Frame = +2

Query: 17  MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 193
           MASTSR++   +V C  HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1   MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60

Query: 194 GVDPFCVGGPENPL*SGGDLSTIIG 268
             DP  VG  +NPL S GDLST+IG
Sbjct: 61  TKDPSRVGDSQNPLLSDGDLSTMIG 85


>BC021000-1|AAH21000.1|  316|Homo sapiens general transcription
           factor IIB protein.
          Length = 316

 Score =  127 bits (306), Expect = 7e-30
 Identities = 61/85 (71%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
 Frame = +2

Query: 17  MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 193
           MASTSR++   +V C  HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1   MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60

Query: 194 GVDPFCVGGPENPL*SGGDLSTIIG 268
             DP  VG  +NPL S GDLST+IG
Sbjct: 61  TKDPSRVGDSQNPLLSDGDLSTMIG 85


>BC020597-1|AAH20597.1|  316|Homo sapiens general transcription
           factor IIB protein.
          Length = 316

 Score =  127 bits (306), Expect = 7e-30
 Identities = 61/85 (71%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
 Frame = +2

Query: 17  MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 193
           MASTSR++   +V C  HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1   MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60

Query: 194 GVDPFCVGGPENPL*SGGDLSTIIG 268
             DP  VG  +NPL S GDLST+IG
Sbjct: 61  TKDPSRVGDSQNPLLSDGDLSTMIG 85


>AL445991-4|CAI41341.1|  316|Homo sapiens general transcription
           factor IIB protein.
          Length = 316

 Score =  127 bits (306), Expect = 7e-30
 Identities = 61/85 (71%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
 Frame = +2

Query: 17  MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 193
           MASTSR++   +V C  HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1   MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60

Query: 194 GVDPFCVGGPENPL*SGGDLSTIIG 268
             DP  VG  +NPL S GDLST+IG
Sbjct: 61  TKDPSRVGDSQNPLLSDGDLSTMIG 85


>AL445991-3|CAI41342.1|  224|Homo sapiens general transcription
           factor IIB protein.
          Length = 224

 Score =  125 bits (301), Expect = 3e-29
 Identities = 60/84 (71%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
 Frame = +2

Query: 20  ASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 196
           ASTSR++   +V C  HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+ 
Sbjct: 1   ASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKAT 60

Query: 197 VDPFCVGGPENPL*SGGDLSTIIG 268
            DP  VG  +NPL S GDLST+IG
Sbjct: 61  KDPSRVGDSQNPLLSDGDLSTMIG 84


>S44184-1|AAB23144.1|  311|Homo sapiens S300-II protein.
          Length = 311

 Score =  120 bits (288), Expect = 1e-27
 Identities = 55/74 (74%), Positives = 61/74 (82%)
 Frame = +2

Query: 47  KVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPFCVGGPE 226
           +V C  HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+  DP  VG  +
Sbjct: 7   RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 66

Query: 227 NPL*SGGDLSTIIG 268
           NPL S GDLST+IG
Sbjct: 67  NPLLSDGDLSTMIG 80


>AL445991-5|CAI41343.1|  231|Homo sapiens general transcription
           factor IIB protein.
          Length = 231

 Score =  109 bits (263), Expect = 1e-24
 Identities = 56/85 (65%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
 Frame = +2

Query: 17  MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 193
           MASTSR++   +V C  HPDA L+EDYRAGDMIC EC     DRVIDVGSEWRTFSN+K+
Sbjct: 1   MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPEC-----DRVIDVGSEWRTFSNDKA 55

Query: 194 GVDPFCVGGPENPL*SGGDLSTIIG 268
             DP  VG  +NPL S GDLST+IG
Sbjct: 56  TKDPSRVGDSQNPLLSDGDLSTMIG 80


>BC104208-1|AAI04209.1|  211|Homo sapiens LOC147650 protein protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 9   RGSWRARREWRLTR 50
           RG WR RR WRL R
Sbjct: 197 RGGWRVRRGWRLER 210


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,114,830
Number of Sequences: 237096
Number of extensions: 791235
Number of successful extensions: 1790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 76,859,062
effective HSP length: 67
effective length of database: 60,973,630
effective search space used: 1341419860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)