Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J15
         (270 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U35148-1|AAA79093.1|  315|Drosophila melanogaster transcription ...   165   1e-41
U02879-1|AAA68626.1|  315|Drosophila melanogaster transcription ...   165   1e-41
M91081-1|AAA28929.1|  315|Drosophila melanogaster RNA polymerase...   165   1e-41
M88164-1|AAA28930.1|  315|Drosophila melanogaster transcription ...   165   1e-41
BT015269-1|AAT94498.1|  315|Drosophila melanogaster LD24035p pro...   165   1e-41
BT011459-1|AAR99117.1|  315|Drosophila melanogaster RE29729p pro...   165   1e-41
AE014134-1887|AAF52951.1|  315|Drosophila melanogaster CG5193-PA...   165   1e-41
AB091099-1|BAC22695.1|  322|Drosophila melanogaster xylosylprote...    26   8.3  

>U35148-1|AAA79093.1|  315|Drosophila melanogaster transcription
           factor IIB protein.
          Length = 315

 Score =  165 bits (400), Expect = 1e-41
 Identities = 75/84 (89%), Positives = 79/84 (94%)
 Frame = +2

Query: 17  MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 196
           MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1   MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60

Query: 197 VDPFCVGGPENPL*SGGDLSTIIG 268
           VDP  VGGPENPL SGGDLSTIIG
Sbjct: 61  VDPSRVGGPENPLLSGGDLSTIIG 84


>U02879-1|AAA68626.1|  315|Drosophila melanogaster transcription
           factor IIB protein.
          Length = 315

 Score =  165 bits (400), Expect = 1e-41
 Identities = 75/84 (89%), Positives = 79/84 (94%)
 Frame = +2

Query: 17  MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 196
           MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1   MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60

Query: 197 VDPFCVGGPENPL*SGGDLSTIIG 268
           VDP  VGGPENPL SGGDLSTIIG
Sbjct: 61  VDPSRVGGPENPLLSGGDLSTIIG 84


>M91081-1|AAA28929.1|  315|Drosophila melanogaster RNA polymerase II
           transcriptionfactor protein.
          Length = 315

 Score =  165 bits (400), Expect = 1e-41
 Identities = 75/84 (89%), Positives = 79/84 (94%)
 Frame = +2

Query: 17  MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 196
           MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1   MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60

Query: 197 VDPFCVGGPENPL*SGGDLSTIIG 268
           VDP  VGGPENPL SGGDLSTIIG
Sbjct: 61  VDPSRVGGPENPLLSGGDLSTIIG 84


>M88164-1|AAA28930.1|  315|Drosophila melanogaster transcription
           factor IIB protein.
          Length = 315

 Score =  165 bits (400), Expect = 1e-41
 Identities = 75/84 (89%), Positives = 79/84 (94%)
 Frame = +2

Query: 17  MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 196
           MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1   MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60

Query: 197 VDPFCVGGPENPL*SGGDLSTIIG 268
           VDP  VGGPENPL SGGDLSTIIG
Sbjct: 61  VDPSRVGGPENPLLSGGDLSTIIG 84


>BT015269-1|AAT94498.1|  315|Drosophila melanogaster LD24035p
           protein.
          Length = 315

 Score =  165 bits (400), Expect = 1e-41
 Identities = 75/84 (89%), Positives = 79/84 (94%)
 Frame = +2

Query: 17  MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 196
           MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1   MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60

Query: 197 VDPFCVGGPENPL*SGGDLSTIIG 268
           VDP  VGGPENPL SGGDLSTIIG
Sbjct: 61  VDPSRVGGPENPLLSGGDLSTIIG 84


>BT011459-1|AAR99117.1|  315|Drosophila melanogaster RE29729p
           protein.
          Length = 315

 Score =  165 bits (400), Expect = 1e-41
 Identities = 75/84 (89%), Positives = 79/84 (94%)
 Frame = +2

Query: 17  MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 196
           MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1   MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60

Query: 197 VDPFCVGGPENPL*SGGDLSTIIG 268
           VDP  VGGPENPL SGGDLSTIIG
Sbjct: 61  VDPSRVGGPENPLLSGGDLSTIIG 84


>AE014134-1887|AAF52951.1|  315|Drosophila melanogaster CG5193-PA
           protein.
          Length = 315

 Score =  165 bits (400), Expect = 1e-41
 Identities = 75/84 (89%), Positives = 79/84 (94%)
 Frame = +2

Query: 17  MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 196
           MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1   MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60

Query: 197 VDPFCVGGPENPL*SGGDLSTIIG 268
           VDP  VGGPENPL SGGDLSTIIG
Sbjct: 61  VDPSRVGGPENPLLSGGDLSTIIG 84


>AB091099-1|BAC22695.1|  322|Drosophila melanogaster xylosylprotein
           beta4-galactosyltransferaseprotein.
          Length = 322

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 173 FSILNQHQ*LYHQLPVRILNI 111
           F IL  H+ L  Q+PV ILNI
Sbjct: 276 FKILKVHEMLIDQVPVTILNI 296


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,629,163
Number of Sequences: 53049
Number of extensions: 236758
Number of successful extensions: 867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 24,988,368
effective HSP length: 68
effective length of database: 21,381,036
effective search space used: 449001756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)