Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J15
         (270 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022981-12|AAG24202.2|  306|Caenorhabditis elegans Tfii(two)b (...   116   3e-27
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    26   4.2  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    25   7.3  
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen...    25   7.3  
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ...    25   7.3  
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    25   7.3  
U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter...    25   7.3  
U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter...    25   7.3  
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    25   7.3  
L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.     25   7.3  
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z78200-4|CAB01582.1|  289|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    25   9.7  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    25   9.7  
AL031633-26|CAA21013.2|  465|Caenorhabditis elegans Hypothetical...    25   9.7  
AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E...    25   9.7  

>AF022981-12|AAG24202.2|  306|Caenorhabditis elegans Tfii(two)b
           (general transcriptionfactor) protein 1 protein.
          Length = 306

 Score =  116 bits (278), Expect = 3e-27
 Identities = 51/72 (70%), Positives = 59/72 (81%)
 Frame = +2

Query: 50  VVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPFCVGGPEN 229
           V C  HPD  LIED+RAGD++C  CGLVVGDR++DVG+EWR+FSNE+SG DP  VG PEN
Sbjct: 5   VQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64

Query: 230 PL*SGGDLSTII 265
           PL SGGDLST I
Sbjct: 65  PLLSGGDLSTTI 76


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 11  RIMASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGD 142
           RI +  S++   K VC  H D+ L++ Y+ G +I    GL +G+
Sbjct: 129 RISSDLSKLGI-KPVCLVHDDSKLLKQYKNGVVI--GYGLTLGE 169


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 249 SPPDHNGFSGPPTQKGS 199
           S   H GF GPP+ +GS
Sbjct: 384 STSSHRGFHGPPSHRGS 400


>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
           protein.
          Length = 1759

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 246 PPDHNGFSGPPTQKGSTPDFSL 181
           PP  +GF G P QKG     +L
Sbjct: 590 PPGQDGFPGLPGQKGEPTQLTL 611


>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
           protein.
          Length = 1758

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 246 PPDHNGFSGPPTQKGSTPDFSL 181
           PP  +GF G P QKG     +L
Sbjct: 589 PPGQDGFPGLPGQKGEPTQLTL 610


>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
           isoform a protein.
          Length = 1758

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 246 PPDHNGFSGPPTQKGSTPDFSL 181
           PP  +GF G P QKG     +L
Sbjct: 589 PPGQDGFPGLPGQKGEPTQLTL 610


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
           isoform b protein.
          Length = 1759

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 246 PPDHNGFSGPPTQKGSTPDFSL 181
           PP  +GF G P QKG     +L
Sbjct: 590 PPGQDGFPGLPGQKGEPTQLTL 611


>U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform a protein.
          Length = 335

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 246 PPDHNGFSGPPTQKGSTPDFSL 181
           PP + G  G P  KG TP+  L
Sbjct: 198 PPGYRGGPGAPGDKGPTPEGDL 219


>U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform b protein.
          Length = 372

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 246 PPDHNGFSGPPTQKGSTPDFSL 181
           PP + G  G P  KG TP+  L
Sbjct: 235 PPGYRGGPGAPGDKGPTPEGDL 256


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
           collagen protein.
          Length = 1795

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 246 PPDHNGFSGPPTQKGSTPDFSL 181
           PP  +GF G P QKG     +L
Sbjct: 626 PPGQDGFPGLPGQKGEPTQLTL 647


>L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.
          Length = 356

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 246 PPDHNGFSGPPTQKGSTPDFSL 181
           PP + G  G P  KG TP+  L
Sbjct: 219 PPGYRGGPGAPGDKGPTPEGDL 240


>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
           protein Y49E10.11b protein.
          Length = 1089

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 71  DAPLIEDYRAGD 106
           DA LIEDYR GD
Sbjct: 420 DASLIEDYRQGD 431


>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
           protein Y49E10.11a protein.
          Length = 1139

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 71  DAPLIEDYRAGD 106
           DA LIEDYR GD
Sbjct: 420 DASLIEDYRQGD 431


>Z78200-4|CAB01582.1|  289|Caenorhabditis elegans Hypothetical
           protein T04H1.5 protein.
          Length = 289

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 80  LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTF 178
           L++D R+   +C E    +G +V  V   WR++
Sbjct: 165 LVKDIRSCRKVCEELDHRIGKKVPSVSWFWRSY 197


>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 246 PPDHNGFSGPPTQKG 202
           PP H G  GPP  +G
Sbjct: 192 PPGHGGMGGPPPGQG 206


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 246 PPDHNGFSGPPTQKG 202
           PP H G  GPP  +G
Sbjct: 472 PPGHGGMGGPPPGQG 486


>AL031633-26|CAA21013.2|  465|Caenorhabditis elegans Hypothetical
           protein Y39A1A.9 protein.
          Length = 465

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 144 ELLMLVQNGEHSAMKNLVLILFV*VDQRIHYDQE 245
           ELL  V +  HS +    LIL     + IHYD+E
Sbjct: 369 ELLQAVTSLYHSRVHERALILQQLRGEAIHYDEE 402


>AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E2
           ATPase protein.
          Length = 815

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 71  DAPLIEDYRAGD 106
           DA LIEDYR GD
Sbjct: 96  DASLIEDYRQGD 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,359,324
Number of Sequences: 27780
Number of extensions: 115712
Number of successful extensions: 348
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)