Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J15
         (270 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   2.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.6  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    20   4.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 230 DSLVHLHKKDQHQIF 186
           +SLVHL+ +DQ + +
Sbjct: 251 ESLVHLYTRDQSETY 265



 Score = 19.8 bits (39), Expect = 6.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 67  MRVAHHLVSLHSRRARHDPR 8
           +R   +L+  HS R   DPR
Sbjct: 268 LRSWRNLMDEHSNRTNSDPR 287


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 15  SWRARREWRLT 47
           SW   R WR+T
Sbjct: 221 SWEQNRSWRIT 231


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 264 MIVERSPPDHNG 229
           +++E   PDHNG
Sbjct: 670 LMIEHLSPDHNG 681


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 270 GPMIVERSPPDHNGFSGPPTQKGSTPDFS 184
           GP    R    HNG +G P +K     FS
Sbjct: 1   GPR-TRRVKRSHNGKNGSPEEKRPRTAFS 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,607
Number of Sequences: 438
Number of extensions: 1607
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)