Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J14
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   2.2  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   3.0  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   3.9  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    24   5.2  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    24   5.2  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    24   6.8  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    23   9.0  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.0  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 229 AANNSLTNGLKDIRATAPQRKPHK 158
           A+ +SL+ G   ++A AP+ KP K
Sbjct: 433 ASESSLSEGTLALKAPAPENKPEK 456


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 195 IYAQ--PLRNANRINFIINHFFAASRLTPLPRQYVS 94
           IY Q  PL  A     +I HFFAA   TP+  +Y+S
Sbjct: 259 IYTQTDPLFMAESTKSLI-HFFAAKSDTPVNLEYIS 293


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 275 SLSFLPSDFLVPGNPRREQQFDKWFKGYTRNR 180
           ++SF  S+F+V G  +  ++F +W + Y   R
Sbjct: 253 NISFYLSNFIVNGVLQYRKEFQRWLRLYEFRR 284


>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 287  ECQESLSFLPSDFLVPG-NPRREQQFDKWFKGYTRNRS 177
            E +E L    ++ LV   +P+++   +KW + YTR R+
Sbjct: 944  EIEEGLQPKDNNLLVNAPHPQKDIASEKWDRPYTRERA 981


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 16  RSGRKYKEYVHLPSNLSCTSNPEDPAAYVLAW 111
           R GRK        S+L  ++N  DP +Y  AW
Sbjct: 331 RCGRKLDLQWVEASHLEASTNTSDPLSYHKAW 362


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +2

Query: 5   HEGVAQGENI-KNMSTYRAISRAHRI---PRILQLTYWRGSGVRRDAAKK*FIIKFMRF 169
           H+G+   + I +N+S  R  S A +I   P  L +T W  +GV   A  K + I+ +++
Sbjct: 138 HDGLGFYQGIPQNISVTRYHSLAGKISSLPDCLDVTSWTENGVIMGARHKKYAIEGVQY 196


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 250 FSCLATRAANNSLTNGLKDIRATAPQRKPHKFYNKSF 140
           F  L   + N S TNGLK    ++       FY  SF
Sbjct: 18  FPSLFHSSCNQSFTNGLKHQSTSSKAMPVSAFYIPSF 54


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 71  VHERLLGKWTYSLYFRPERPPR 6
           +H  L+G  T+ L  R ++PPR
Sbjct: 234 LHNELIGPSTFPLPKRAKKPPR 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,587
Number of Sequences: 5004
Number of extensions: 27072
Number of successful extensions: 68
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)