Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_J14
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 0.67
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 28 2.0
06_01_0378 - 2717010-2717565,2718165-2718229,2718365-2719117 27 2.7
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690... 27 4.7
01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816... 27 4.7
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 26 6.2
04_03_0093 - 11085882-11087339 26 6.2
01_06_0767 + 31823659-31823734,31823859-31823979,31824078-318241... 26 6.2
10_08_0370 - 17259802-17261595 26 8.3
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = -3
Query: 202 LKDIRATAPQRKPHKFYNKSFFRRITPYTASTPIRKLQDPRDSMCTRD----CSVSGHIL 35
L + A AP+ + Y K ++ + +P +KL P +C C GHI
Sbjct: 378 LVSLHAAAPESRQKVVYKKYASPKLGAVSLHSPAKKLLPPPSPVCVLQFLVCCCCYGHIQ 437
Query: 34 YIF 26
++F
Sbjct: 438 FVF 440
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 13 GRSGRKYKEYVHLPSNLSCTSNPEDPAAYVL 105
G + ++YK V++ SN SCT+N P A V+
Sbjct: 155 GVNEKEYKSDVNIVSNASCTTNCLAPLAKVI 185
>06_01_0378 - 2717010-2717565,2718165-2718229,2718365-2719117
Length = 457
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 104 WRGSGVRRDAAKK*FIIKFMRFALRSGCAYI 196
WRG+G+ R+A ++ + R + SG AY+
Sbjct: 75 WRGAGITREAVERGRRHAYFRLVVVSGRAYV 105
>11_05_0050 +
18665251-18665613,18667280-18667744,18668548-18669037,
18669115-18669143
Length = 448
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 89 GSSGFDVHERLLGKWTY 39
G G DV ER LG+W Y
Sbjct: 99 GRGGCDVEERELGRWAY 115
>01_06_1728 +
39480252-39480450,39480552-39481224,39481554-39481638,
39481731-39481820,39481953-39482026,39482421-39482505,
39482582-39482668,39482797-39482927,39483642-39483723,
39483810-39483857,39484793-39484912
Length = 557
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 322 ISFGKSFGCWGENVRNHCHSCRVIFSCLATRAANNSLTNGL 200
I+ K F W ++ H+C + SCL T + +SL L
Sbjct: 466 ITSPKGFAQWELDLLYRHHACSNLLSCLTTLESLSSLVQSL 506
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 13 GRSGRKYKEYVHLPSNLSCTSNPEDPAAYVL 105
G + ++YK + + SN SCT+N P A V+
Sbjct: 184 GVNEKEYKPDIDIVSNASCTTNCLAPLAKVI 214
>04_03_0093 - 11085882-11087339
Length = 485
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 143 IFSPHHALHRFHANT*AAGSSGFDVHER 60
++ PH ALH+ A AAG FDV R
Sbjct: 84 LWPPHDALHQAVATATAAGLQEFDVKLR 111
>01_06_0767 +
31823659-31823734,31823859-31823979,31824078-31824189,
31824278-31824691,31824795-31824898,31825017-31825136,
31825344-31825467,31826567-31826680,31826789-31826980,
31827328-31827424,31827505-31827653,31828729-31829013
Length = 635
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 52 PSNLSCTSNPEDPA 93
P+NL C+S PEDP+
Sbjct: 477 PANLDCSSLPEDPS 490
>10_08_0370 - 17259802-17261595
Length = 597
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -3
Query: 316 FGKSFG-CWGENVRNHCHSCRVIFSC 242
F K G C+ +N+R +C+S ++I +C
Sbjct: 130 FSKHGGKCYADNLRRYCNSGKLIQAC 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,699,100
Number of Sequences: 37544
Number of extensions: 193348
Number of successful extensions: 475
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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