Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J14
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    28   1.4  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    28   1.4  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    28   1.4  
Z83115-2|CAE17889.1|  373|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    27   4.2  
Z50176-4|CAA90541.1|  546|Caenorhabditis elegans Hypothetical pr...    26   5.5  
AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical ...    26   5.5  
U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis ...    25   9.7  

>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
           protein ZK1067.1 protein.
          Length = 1323

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 121 YTASTPIRKLQDPRDSMCTRDCSVSGHI 38
           Y A+  +R+ +  R S C + C+V GH+
Sbjct: 347 YDATKDVRECEKCRSSSCPKICTVDGHL 374


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
           protein.
          Length = 1323

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 121 YTASTPIRKLQDPRDSMCTRDCSVSGHI 38
           Y A+  +R+ +  R S C + C+V GH+
Sbjct: 347 YDATKDVRECEKCRSSSCPKICTVDGHL 374


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
           kinase protein.
          Length = 1374

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 121 YTASTPIRKLQDPRDSMCTRDCSVSGHI 38
           Y A+  +R+ +  R S C + C+V GH+
Sbjct: 398 YDATKDVRECEKCRSSSCPKICTVDGHL 425


>Z83115-2|CAE17889.1|  373|Caenorhabditis elegans Hypothetical
           protein K11D2.5 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -3

Query: 166 PHKFYNKSFFRRITPYTAST--PIRKL-----QDPRDSMCTRDCSVSGHILYIFA 23
           PH+F+  SFF++IT   A     +R+L     ++ R S  +R C+ S   L  FA
Sbjct: 3   PHQFFPFSFFQKITEKNAKNCQKMRRLLPIFRRNLRISAFSRQCTTSDDTLRTFA 57


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 1   IARGGRSGRKYKEYVHLPSNLSCTSNPEDPAAYVLAWKR 117
           IA G  S R Y+EY      + C     D  A +  WK+
Sbjct: 309 IAMGQESNRPYEEYEETGETVYCAKRLGDCGATLPLWKQ 347


>Z50176-4|CAA90541.1|  546|Caenorhabditis elegans Hypothetical
           protein C09G1.4 protein.
          Length = 546

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 151 NKSFFRRITPYTASTPIRKLQDPRDSMCT 65
           NKS++  I  Y A  PIR L   + S+ T
Sbjct: 297 NKSYYEGIDIYDAQPPIRPLPQQQTSLMT 325


>AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical
           protein F54A3.4 protein.
          Length = 755

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 62  RLLGKWTYSLYFRPERP 12
           +++G+W  S  FRPERP
Sbjct: 318 KMVGEWKSSSKFRPERP 334


>U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis
           abnormal protein 1 protein.
          Length = 703

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 1   IARGGRSGRKYKEYVHLPSNLSCTSNPEDPAAYVL 105
           +  GG + R+      + SNLS    PED   Y++
Sbjct: 211 VEEGGNNSREDSSIYSIMSNLSFIPRPEDDHKYLI 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,094,072
Number of Sequences: 27780
Number of extensions: 159932
Number of successful extensions: 455
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)