Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_J13
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 26 1.3
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 1.3
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 1.8
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 25 3.1
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 25 3.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 4.1
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 25 4.1
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 24 5.4
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 24 7.1
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 24 7.1
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 24 7.1
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 24 7.1
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 23 9.4
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 23 9.4
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 23 9.4
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 1.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 5 LAPPRTSNESMPPASTAPPLVQINDIRYHIFEQVMKYLYS 124
L P+ N+++P S + L IN +H F +KY S
Sbjct: 234 LTSPKIDNKNLPKNSASLILPPINYDTFHSFLDSLKYFLS 273
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.2 bits (55), Expect = 1.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 130 PSRVKVFHYLLKNMISYVVNLY 65
P +V FH +LK IS NLY
Sbjct: 189 PEQVDTFHVVLKKFISETPNLY 210
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 1.8
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 103 SNEIPLLGRVRQFRYT*DRCTGGSSAAASFYQLL 204
S+++PLLG V Y RCT G A S QLL
Sbjct: 806 SSKVPLLGGVTNVDYGWARCT-GQRAQKSNAQLL 838
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 127 SRVKVFHYLLKNMISYVVNLYKRGSCARR 41
SRVK F L KN ++ + L G CA +
Sbjct: 293 SRVKTFPLLWKNPVTGKLALQTHGCCAEK 321
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 3.1
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +2
Query: 26 NESMPPASTAPPLVQINDIRYHIFEQVMKYLYSGGCASLDIPETDVLEVRRQ 181
N P PPL DI EQ ++YL+ G ET L+ R Q
Sbjct: 327 NGDEPRDYELPPLASFEDIDNLTKEQCIQYLHGYGVNKFSPLETVKLKERLQ 378
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.6 bits (51), Expect = 4.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 14 PRTSNESMPPASTAPPLVQIN 76
PR + S PP S PP Q+N
Sbjct: 633 PRPATPSNPPRSLPPPSGQVN 653
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 4.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 268 QRQGYVSRQIWPLSLHSVFEVVAAGRRKPLPT 173
Q GYV + PLS+H F+ R P T
Sbjct: 238 QVSGYVDSKYIPLSMHGQFDETKLYERAPPET 269
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 5.4
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 98 EQVMKYLYSGGCASLD----IPETDVLEVRRQRLPSTSCYHFKDTVKRE 232
+ V Y +GG +S+ I DV+++R Q S+ FK+TV++E
Sbjct: 14 QPVWHYTLAGGISSVICRFMIAPFDVIKIRMQITQSSLRPVFKETVQKE 62
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 23.8 bits (49), Expect = 7.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 23 SNESMPPASTAPPLVQINDIRYHIFEQVMKYLYSGGCASLDIPET 157
S S P++ + P V+ + YH ++V Y+GG S +T
Sbjct: 308 STASSIPSNCSCPSVKSSGPSYHAEQEVNVNSYNGGIPSTSYNDT 352
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 23.8 bits (49), Expect = 7.1
Identities = 13/57 (22%), Positives = 28/57 (49%)
Frame = +2
Query: 14 PRTSNESMPPASTAPPLVQINDIRYHIFEQVMKYLYSGGCASLDIPETDVLEVRRQR 184
P+ ++ES+P +T NDIR+ ++ + C +L + ++ +RR +
Sbjct: 640 PQETSESLPSPNTEEMGESYNDIRF-TYDYIDGRFLETACVTLIVVVVGLVLMRRHQ 695
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 23.8 bits (49), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 78 SLICTRGGAVLAGGIDSF 25
S++ + GA+ AG +DSF
Sbjct: 267 SIVAPKSGAITAGQVDSF 284
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 182 RLPSTSCYHFKDTVKRERPNLSTYITLSLFIF 277
RL C +F D + R +LS +T FIF
Sbjct: 228 RLQRYVCQYFSDIIFDSRDSLSDSMTTPEFIF 259
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 84 LMSLICTRGGAVLAGGIDSFEVL 16
++S+ C R GA G+D E++
Sbjct: 67 ILSMFCARAGAKHVYGVDMSEII 89
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 2 MLAPPRTSNESMPPASTAPPLVQINDIRYHIFEQVMKYLYSGG 130
+ +P N + P S PP+ ++ DI EQ ++YL G
Sbjct: 246 LASPVPFLNGNEPANSGLPPIERVEDIDELSKEQCVQYLKGYG 288
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 23.4 bits (48), Expect = 9.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 152 ETDVLEVRRQRLP--STSCYHFKDTVKRERPNLST 250
+T+V+E L +T+ F+D+++RER ST
Sbjct: 770 QTNVIEASASALDVSNTAILSFEDSLRRERDEKST 804
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,859
Number of Sequences: 5004
Number of extensions: 27023
Number of successful extensions: 84
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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