Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_J13
(336 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79759-4|CAB02139.2| 395|Caenorhabditis elegans Hypothetical pr... 32 0.12
U67737-1|AAC63596.1| 395|Caenorhabditis elegans MEL-26 protein. 32 0.12
AL132877-10|CAB60850.1| 402|Caenorhabditis elegans Hypothetical... 31 0.16
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 29 0.63
U13072-5|AAK31400.1| 390|Caenorhabditis elegans Hypothetical pr... 28 1.4
U13072-4|AAL00851.1| 397|Caenorhabditis elegans Hypothetical pr... 28 1.4
AJ320257-1|CAC44622.1| 877|Caenorhabditis elegans putative telo... 27 2.5
AF400665-1|AAL28024.1| 877|Caenorhabditis elegans CLK-2 protein. 27 2.5
AC006605-5|AAK85444.3| 877|Caenorhabditis elegans Clock (biolog... 27 2.5
DQ338465-1|ABC67522.1| 690|Caenorhabditis elegans KEL-8 protein. 26 5.8
AF101315-1|AAC69225.2| 369|Caenorhabditis elegans Hypothetical ... 26 5.8
AF100305-5|AAN65285.1| 353|Caenorhabditis elegans Hypothetical ... 26 5.8
AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical ... 26 5.8
AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical ... 26 5.8
AF067946-5|AAC17684.4| 690|Caenorhabditis elegans Hypothetical ... 26 5.8
AF022980-14|AAG24190.1| 332|Caenorhabditis elegans Serpentine r... 26 5.8
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 26 7.7
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 26 7.7
Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical pr... 26 7.7
Z49907-1|CAA90090.1| 417|Caenorhabditis elegans Hypothetical pr... 26 7.7
AM085500-1|CAJ30198.1| 947|Caenorhabditis elegans autophagy pro... 26 7.7
AF101315-4|AAO25988.1| 719|Caenorhabditis elegans Hypothetical ... 26 7.7
AF101315-3|AAC69227.1| 880|Caenorhabditis elegans Hypothetical ... 26 7.7
AF047659-6|AAC04424.1| 409|Caenorhabditis elegans Hypothetical ... 26 7.7
>Z79759-4|CAB02139.2| 395|Caenorhabditis elegans Hypothetical
protein ZK858.4 protein.
Length = 395
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 181 AASFYQLLPLQRHCEARAAKSVDLHNLVSVYIHAKVYGATQLLEYCQGFLL 333
AA Y+L L+ HCE +++++ N S+ I +Y A +L + ++L
Sbjct: 279 AADKYRLEELKSHCEKYLVENINIENACSLLIIGDLYSAPKLRKRAVTYIL 329
Score = 25.8 bits (54), Expect = 7.7
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 62 LVQINDIRYHIFEQVMKYLYSGGC 133
++ IND+ Y + +++ Y+Y G C
Sbjct: 242 MMYINDMDYDVIYEMVYYIYCGRC 265
>U67737-1|AAC63596.1| 395|Caenorhabditis elegans MEL-26 protein.
Length = 395
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 181 AASFYQLLPLQRHCEARAAKSVDLHNLVSVYIHAKVYGATQLLEYCQGFLL 333
AA Y+L L+ HCE +++++ N S+ I +Y A +L + ++L
Sbjct: 279 AADKYRLEELKSHCEKYLVENINIENACSLLIIGDLYSAPKLRKRAVTYIL 329
Score = 25.8 bits (54), Expect = 7.7
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 62 LVQINDIRYHIFEQVMKYLYSGGC 133
++ IND+ Y + +++ Y+Y G C
Sbjct: 242 MMYINDMDYDVIYEMVYYIYCGRC 265
>AL132877-10|CAB60850.1| 402|Caenorhabditis elegans Hypothetical
protein Y105E8B.4 protein.
Length = 402
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 184 ASFYQLLPLQRHCEARAAKSVDLHNLVSVYIHAKVYGATQLLEYCQGFLL 333
A YQ+L L+ CE ++++N++ HA+ Y L + C F +
Sbjct: 307 AEKYQILALKMTCEQHLLDRLNVNNVLECITHAERYNTDVLYDACVDFAI 356
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 0.63
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Frame = +2
Query: 35 MPPASTAPPLVQINDIRYHIFEQVMKYLYSGGCASLDIPETDVLEVRRQRLPSTSC---- 202
+P A T L Q N + +H+ EQ+ +++ GG AS + V ++ C
Sbjct: 327 LPVAFTLGWLPQFNTLAHHVAEQIEMHIF-GGTASFSVFSACVQLIKSSVFYVALCVLCR 385
Query: 203 --YHFKDTVKRERPNLSTYITLSLFIFML 283
Y F T + P ST++ S+ + L
Sbjct: 386 VAYTFSPT-STQNPLFSTFVATSVAVSYL 413
>U13072-5|AAK31400.1| 390|Caenorhabditis elegans Hypothetical
protein C07D10.2a protein.
Length = 390
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 71 INDIRYHIFEQVMKYLYSGGCASLDIPETDVL 166
+ DI Y + + ++ Y+Y+G C ++ D+L
Sbjct: 246 LRDIDYEVVQAILYYIYTGTCTNMGGNALDIL 277
>U13072-4|AAL00851.1| 397|Caenorhabditis elegans Hypothetical
protein C07D10.2b protein.
Length = 397
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 71 INDIRYHIFEQVMKYLYSGGCASLDIPETDVL 166
+ DI Y + + ++ Y+Y+G C ++ D+L
Sbjct: 253 LRDIDYEVVQAILYYIYTGTCTNMGGNALDIL 284
>AJ320257-1|CAC44622.1| 877|Caenorhabditis elegans putative
telomere binding protein protein.
Length = 877
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 104 VMKYLYSGGCASLDIPETDVLEVRRQRLPSTSCYHFKDTV 223
V K L S C+SL + ETDV V+ R +++C + + V
Sbjct: 103 VEKSLTSAICSSLKVKETDVSAVQLYREFASACSNIPEKV 142
>AF400665-1|AAL28024.1| 877|Caenorhabditis elegans CLK-2 protein.
Length = 877
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 104 VMKYLYSGGCASLDIPETDVLEVRRQRLPSTSCYHFKDTV 223
V K L S C+SL + ETDV V+ R +++C + + V
Sbjct: 103 VEKSLTSAICSSLKVKETDVSAVQLYREFASACSNIPEKV 142
>AC006605-5|AAK85444.3| 877|Caenorhabditis elegans Clock
(biological timing) abnormalityprotein 2 protein.
Length = 877
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 104 VMKYLYSGGCASLDIPETDVLEVRRQRLPSTSCYHFKDTV 223
V K L S C+SL + ETDV V+ R +++C + + V
Sbjct: 103 VEKSLTSAICSSLKVKETDVSAVQLYREFASACSNIPEKV 142
>DQ338465-1|ABC67522.1| 690|Caenorhabditis elegans KEL-8 protein.
Length = 690
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 220 CEARAAKSVDLHNLVSVYIHAKVYGATQLLEYCQGF 327
C+ A + HN +S+Y + +Y T L+ + F
Sbjct: 200 CQQFLATMITSHNCMSLYHFSDIYNCTNLISSIEDF 235
>AF101315-1|AAC69225.2| 369|Caenorhabditis elegans Hypothetical
protein T22H9.4 protein.
Length = 369
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 156 QMYWRFVGSGFLLPAATTSKTL*SESGQICRLT*P 260
QM + F GF++PAAT++ S +G T P
Sbjct: 246 QMKFDFSAGGFMIPAATSANASTSPAGSPFETTSP 280
>AF100305-5|AAN65285.1| 353|Caenorhabditis elegans Hypothetical
protein W04B5.3c protein.
Length = 353
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 11 PPRTSNESMPPASTAPP 61
PP+TS S PP + APP
Sbjct: 246 PPQTSMPSAPPITQAPP 262
>AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3a protein.
Length = 426
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 11 PPRTSNESMPPASTAPP 61
PP+TS S PP + APP
Sbjct: 246 PPQTSMPSAPPITQAPP 262
>AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3b protein.
Length = 426
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 11 PPRTSNESMPPASTAPP 61
PP+TS S PP + APP
Sbjct: 246 PPQTSMPSAPPITQAPP 262
>AF067946-5|AAC17684.4| 690|Caenorhabditis elegans Hypothetical
protein W02G9.2 protein.
Length = 690
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 220 CEARAAKSVDLHNLVSVYIHAKVYGATQLLEYCQGF 327
C+ A + HN +S+Y + +Y T L+ + F
Sbjct: 200 CQQFLATMITSHNCMSLYHFSDIYNCTNLISSIEDF 235
>AF022980-14|AAG24190.1| 332|Caenorhabditis elegans Serpentine
receptor, class j protein57 protein.
Length = 332
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 233 RPNLSTYITLSLFIFMLRFTVLH 301
R N Y+T+S F+F+L F H
Sbjct: 124 RNNFHWYLTISAFVFVLYFATWH 146
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 8 APPRTSNESMPPASTAPPLVQINDIRY 88
+P +S E++ PAS +PP+ QI +
Sbjct: 619 SPLPSSTENVHPASNSPPMKQIEGFEF 645
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 8 APPRTSNESMPPASTAPPLVQINDIRY 88
+P +S E++ PAS +PP+ QI +
Sbjct: 619 SPLPSSTENVHPASNSPPMKQIEGFEF 645
>Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical
protein T23B5.3c protein.
Length = 249
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 8 APPRTSNESMPPASTAPPLVQINDIRY 88
+P +S E++ PAS +PP+ QI +
Sbjct: 52 SPLPSSTENVHPASNSPPMKQIEGFEF 78
>Z49907-1|CAA90090.1| 417|Caenorhabditis elegans Hypothetical
protein B0491.1 protein.
Length = 417
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 65 VQINDIRYHIFEQVMKYLYSGG 130
V DI YH+F K++ +GG
Sbjct: 42 VNFTDIDYHVFSDAAKHVSNGG 63
>AM085500-1|CAJ30198.1| 947|Caenorhabditis elegans autophagy
protein 9 protein.
Length = 947
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 280 HEYKQRQGYVSRQIWPLSLHSVFEVVAAGRRKPLPTNLQYICLRYI*TGAPS 125
H + + Y++ I LH VF+V G LP NL++ R + T + S
Sbjct: 298 HRILRYKNYMTGMINKRILHPVFDVPFLGPIAYLPNNLKHEIERILFTSSTS 349
>AF101315-4|AAO25988.1| 719|Caenorhabditis elegans Hypothetical
protein T22H9.2b protein.
Length = 719
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 280 HEYKQRQGYVSRQIWPLSLHSVFEVVAAGRRKPLPTNLQYICLRYI*TGAPS 125
H + + Y++ I LH VF+V G LP NL++ R + T + S
Sbjct: 298 HRILRYKNYMTGMINKRILHPVFDVPFLGPIAYLPNNLKHEIERILFTSSTS 349
>AF101315-3|AAC69227.1| 880|Caenorhabditis elegans Hypothetical
protein T22H9.2a protein.
Length = 880
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 280 HEYKQRQGYVSRQIWPLSLHSVFEVVAAGRRKPLPTNLQYICLRYI*TGAPS 125
H + + Y++ I LH VF+V G LP NL++ R + T + S
Sbjct: 298 HRILRYKNYMTGMINKRILHPVFDVPFLGPIAYLPNNLKHEIERILFTSSTS 349
>AF047659-6|AAC04424.1| 409|Caenorhabditis elegans Hypothetical
protein K07H8.5 protein.
Length = 409
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 2 MLAPPRTSNESMPPASTAPPLVQINDIRY 88
+LAPP E P +T PP+ IN+ Y
Sbjct: 233 LLAPPPPKIEPNIPTTTVPPVRYINNPDY 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,904,828
Number of Sequences: 27780
Number of extensions: 158348
Number of successful extensions: 567
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -