Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J13
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   3.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   9.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 103 LLKNMISYVVNLYKRGSC 50
           LLK+  S + N YK+G C
Sbjct: 8   LLKSRESLLSNAYKQGFC 25


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 170 PPVHLSQVYLNWRTLPSKG 114
           PP +   V+ +WR  P+ G
Sbjct: 35  PPEYSDLVHPHWRAFPAPG 53


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 11  PPRTSNESMPPASTAPPLVQINDI 82
           PP+ +    PP+S+ P   +++ I
Sbjct: 338 PPKPAPPPPPPSSSGPDSAKLDKI 361


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 170 PPVHLSQVYLNWRTLPSKG 114
           PP +   V  +WR  P+ G
Sbjct: 35  PPEYSDLVRPHWRAFPAPG 53


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 29  ESMPPASTAPPLV 67
           ESMP  S A PL+
Sbjct: 245 ESMPTTSDAVPLI 257


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 29  ESMPPASTAPPLV 67
           ESMP  S A PL+
Sbjct: 245 ESMPTTSDAVPLI 257


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 29  ESMPPASTAPPLV 67
           ESMP  S A PL+
Sbjct: 245 ESMPTTSDAVPLI 257


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 29  ESMPPASTAPPLV 67
           ESMP  S A PL+
Sbjct: 313 ESMPTTSDAVPLI 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,156
Number of Sequences: 438
Number of extensions: 1870
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)