Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_J12
(124 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 24 3.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 23 4.2
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 23 4.2
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 23 4.2
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 23 5.6
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 23 7.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 22 9.7
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ... 22 9.7
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 22 9.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 22 9.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 22 9.7
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 118 NFFVCRFASVRYCHTRRHFLMLKHVKI 38
+ + R A +RY R+FL+L+HV++
Sbjct: 577 SLILSRKAIIRYQLLFRYFLLLRHVEM 603
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 68 ASGVTVSDACKTTYEEIKK 124
A+ + +DACK+ +E IKK
Sbjct: 401 ANHLWTADACKSHFERIKK 419
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 30 SGAIFTCFNIKKWRLV*QYRTLA 98
+G +F NIKKWRL +LA
Sbjct: 282 AGYVFIEANIKKWRLAPAVGSLA 304
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 19 RGRLVVQFLRVLTSKNGVWCDSIGRLQND 105
RG + +++ N +W D+I L ND
Sbjct: 934 RGLFIFGNAQLVAESNPLWWDAINTLMND 962
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 124 LFNFFVCRFASVRYCHTRRHFLMLKHV 44
LFN+ + + S C+T+ LM++ V
Sbjct: 23 LFNYLLQNWKSFETCNTKERELMVQQV 49
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 22.6 bits (46), Expect = 7.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 18 QRKISGAIFTCFNIKKWRLV*QYRTLAKRHTKKLK 122
Q + ++ T I KW QY+ + KR+ LK
Sbjct: 1509 QTLLDESVITIGEIIKWAHWNQYQAILKRYVSLLK 1543
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 40 FLRVLTSKNGVWCDSIGR 93
FLR LT +N V D +GR
Sbjct: 1852 FLRGLTMQNAVHRDELGR 1869
>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 16 GRGRLVVQFLRVLTSKNGVW 75
GR R + + + +TSK GVW
Sbjct: 282 GRFRGLQKLMEHITSKEGVW 301
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 22.2 bits (45), Expect = 9.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 115 FFVCRFASVRYCHTRRHFLMLKHVKIAPL 29
FF+ R+ V Y T R L V +PL
Sbjct: 1052 FFLYRYNQVYYTQTSRELKRLDSVTRSPL 1080
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 37 APLIFLCRXIAA 2
APLI+ CR +AA
Sbjct: 610 APLIYTCRLVAA 621
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 37 APLIFLCRXIAA 2
APLI+ CR +AA
Sbjct: 610 APLIYTCRLVAA 621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,507
Number of Sequences: 5004
Number of extensions: 5276
Number of successful extensions: 22
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 21
effective length of database: 2,257,394
effective search space used: 42890486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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