Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J12
         (124 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0995 - 7733808-7734089                                           26   3.7  
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928...    25   6.5  
02_05_0850 + 32209798-32210086,32210779-32212316                       25   8.6  

>06_01_0995 - 7733808-7734089
          Length = 93

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 89  PILSHQTPFFDVKTRKNCTTNLPLPXNC 6
           P L H  P  ++K   +C TN P   NC
Sbjct: 60  PSLRHWLPVLEMKQGASCQTNDPNNVNC 87


>04_04_0752 -
           27791126-27791167,27791792-27791863,27792771-27792855,
           27792971-27793236,27794117-27794301,27794925-27795018,
           27795193-27795284,27795401-27795539,27796101-27796385
          Length = 419

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 68  ASGVTVSDACKTTYEEIK 121
           ASG+ V D CK  ++E+K
Sbjct: 269 ASGMAVGDECKLKFQELK 286


>02_05_0850 + 32209798-32210086,32210779-32212316
          Length = 608

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 77  HQTPFFDVKTRKNCTTNLPLP 15
           H  PF+D KT++   T   LP
Sbjct: 566 HSPPFYDCKTKRGVDTGTILP 586


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,212
Number of Sequences: 37544
Number of extensions: 31716
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 14,793,348
effective HSP length: 21
effective length of database: 14,004,924
effective search space used: 266093556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)