Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J11
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    30   0.098
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   2.1  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   3.7  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   4.9  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   6.4  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    24   6.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    24   8.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    24   8.5  
SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1...    24   8.5  

>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 30.3 bits (65), Expect = 0.098
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 75  FMQSFIWHTY-SVFIRLIHNGLFLIFYFKYINCFFLD 182
           ++QS +WH Y S+ I L+ +G+  +F  K I+ F LD
Sbjct: 206 YLQSIVWHLYHSMIISLLPDGIRNLF-LKAISYFLLD 241


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 93  WHTYSVFIRLIHNGLFLIFYFKYINCFFLDI 185
           WH Y ++ +    GL L+++F  I+   +++
Sbjct: 888 WHVYWMYFKSCSIGLILLYFFFIISGIMMNV 918


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 341 TSRNVSNEYHTGMNRLIIKHNFVQTFGDTTTNLH 240
           +S + SN   TGM+   + H ++   G    NLH
Sbjct: 424 SSSSNSNNLSTGMSMRTLGHQYLNLQGSGVKNLH 457


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 63  TLSLFMQSFIWHT-YSVFIRLIHNGLFLIF 149
           T+  F+   +  T Y +FI ++HN L ++F
Sbjct: 100 TIGFFLLVLVRMTDYWIFINILHNALLVLF 129


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 365 RYTRPLHCTSRNVSNEYHTGMNRLIIKHNFVQ 270
           RY  P   T   +++ YH+ ++ L+ + +FVQ
Sbjct: 874 RYCEPQTYTMTRLNDIYHSFLSFLVTQDDFVQ 905


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 65  FVIVHAKFYLAYLQCFYTPHT*WFIFNILF*IYKLFFFRYT*TTFINKEV 214
           FVI H    L Y QC Y+      +F IL  ++   F+      F  KE+
Sbjct: 171 FVINHILILLGYFQCSYSVFY-ASVFYILLGVFIRVFYLVNKEKFEKKEL 219


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 228 SKKVHTSLFINVVYVYLKKNNLY 160
           S   HTS+  +VV+ YLK  N +
Sbjct: 198 SLTTHTSMINSVVFQYLKDENKF 220


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -2

Query: 217 TYFLIYKRCLC--ISKKKQFI 161
           TY ++YK+C C  +S  KQ+I
Sbjct: 524 TYEILYKKCKCSLLSLLKQYI 544


>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 265 SVTPQRIYTFKCFQKSTYFLIYK 197
           +VTPQR +TF      T +LI K
Sbjct: 60  TVTPQRTFTFTIHTPPTSWLISK 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,064
Number of Sequences: 5004
Number of extensions: 28392
Number of successful extensions: 65
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)