Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J11
         (365 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U17473-1|AAA62158.1|  461|Homo sapiens calcitonin-like receptor ...    31   1.1  
L76380-1|AAC41994.1|  461|Homo sapiens CGRP type 1 receptor prot...    31   1.1  
AY389506-1|AAQ91332.1|  461|Homo sapiens calcitonin receptor-lik...    31   1.1  
AC007319-1|AAY14806.1|  390|Homo sapiens unknown protein.              31   1.1  
AK000634-1|BAA91299.1|  449|Homo sapiens protein ( Homo sapiens ...    29   6.0  

>U17473-1|AAA62158.1|  461|Homo sapiens calcitonin-like receptor
           protein.
          Length = 461

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 66  LSLFMQSFIWHTYSVFIRLIHNGLFLIFYFKYINCFFLDIHR 191
           L+LF  + I H  S+   LI  G+F  FYFK ++C  + +H+
Sbjct: 139 LNLFYLTIIGHGLSIASLLISLGIF--FYFKSLSCQRITLHK 178


>L76380-1|AAC41994.1|  461|Homo sapiens CGRP type 1 receptor
           protein.
          Length = 461

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 66  LSLFMQSFIWHTYSVFIRLIHNGLFLIFYFKYINCFFLDIHR 191
           L+LF  + I H  S+   LI  G+F  FYFK ++C  + +H+
Sbjct: 139 LNLFYLTIIGHGLSIASLLISLGIF--FYFKSLSCQRITLHK 178


>AY389506-1|AAQ91332.1|  461|Homo sapiens calcitonin receptor-like
           protein protein.
          Length = 461

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 66  LSLFMQSFIWHTYSVFIRLIHNGLFLIFYFKYINCFFLDIHR 191
           L+LF  + I H  S+   LI  G+F  FYFK ++C  + +H+
Sbjct: 139 LNLFYLTIIGHGLSIASLLISLGIF--FYFKSLSCQRITLHK 178


>AC007319-1|AAY14806.1|  390|Homo sapiens unknown protein.
          Length = 390

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 66  LSLFMQSFIWHTYSVFIRLIHNGLFLIFYFKYINCFFLDIHR 191
           L+LF  + I H  S+   LI  G+F  FYFK ++C  + +H+
Sbjct: 139 LNLFYLTIIGHGLSIASLLISLGIF--FYFKSLSCQRITLHK 178


>AK000634-1|BAA91299.1|  449|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20627 fis, clone KAT03923. ).
          Length = 449

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 353 PLHCTSRNVSNEYHTG-MNRLIIKHNFVQ 270
           P+HCT+   ++EYH G +++ +  H +V+
Sbjct: 170 PMHCTAFATADEYHLGNLSQDLASHGYVE 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,475,937
Number of Sequences: 237096
Number of extensions: 893714
Number of successful extensions: 994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2306171440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)