Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J11
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    30   0.58 
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    30   0.58 
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    30   0.58 
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    30   0.58 
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    30   0.58 
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    30   0.58 
AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical ...    27   3.1  
Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine rece...    27   5.4  
AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.    27   5.4  
AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln (ne...    27   5.4  
AC087081-5|AAK66038.1|  273|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z73969-9|CAE17694.1|  244|Caenorhabditis elegans Hypothetical pr...    26   7.2  

>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 93  WHTYSVFIRLIHNGLFLIFYFKYINCFFLDIH 188
           W  +SVFI +IH   FL+  ++ I+ FF  +H
Sbjct: 119 WSQFSVFISIIHLLSFLLHCYQLIDNFFPFLH 150


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 93  WHTYSVFIRLIHNGLFLIFYFKYINCFFLDIH 188
           W  +SVFI +IH   FL+  ++ I+ FF  +H
Sbjct: 119 WSQFSVFISIIHLLSFLLHCYQLIDNFFPFLH 150


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 93  WHTYSVFIRLIHNGLFLIFYFKYINCFFLDIH 188
           W  +SVFI +IH   FL+  ++ I+ FF  +H
Sbjct: 177 WSQFSVFISIIHLLSFLLHCYQLIDNFFPFLH 208


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 93  WHTYSVFIRLIHNGLFLIFYFKYINCFFLDIH 188
           W  +SVFI +IH   FL+  ++ I+ FF  +H
Sbjct: 177 WSQFSVFISIIHLLSFLLHCYQLIDNFFPFLH 208


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 93  WHTYSVFIRLIHNGLFLIFYFKYINCFFLDIH 188
           W  +SVFI +IH   FL+  ++ I+ FF  +H
Sbjct: 177 WSQFSVFISIIHLLSFLLHCYQLIDNFFPFLH 208


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 93  WHTYSVFIRLIHNGLFLIFYFKYINCFFLDIH 188
           W  +SVFI +IH   FL+  ++ I+ FF  +H
Sbjct: 149 WSQFSVFISIIHLLSFLLHCYQLIDNFFPFLH 180


>AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical
           protein W09B6.5 protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +3

Query: 66  LSLFMQSFIWHTYSVFIRLIHNGLFLIFYFKYINCFFLDIHRQRL 200
           L ++  S  +++YS+ +RL  +  F+  +++Y  CFF  + R ++
Sbjct: 159 LCVYFFSLAFNSYSLSLRLSDH--FIFTFYRYWCCFFCTLFRVKI 201


>Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical
           protein F35G12.2 protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 362 YTRPLHCTSRNVSNEYHTGMNRLIIKHNFVQTFGDTTTNLH 240
           Y   LHC++       HTG++ +II+ N   T G+ + N H
Sbjct: 139 YANVLHCSTIPTVPSRHTGIDMVIIREN---TEGEYSGNEH 176


>U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 14 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 134 FIFNILF*IYKLFFFRYT 187
           F F +LF IY  FFF YT
Sbjct: 249 FTFKVLFQIYYSFFFSYT 266


>AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 265 NVCTKLCLIISRFIPV*YSFDTFLLVQ 345
           N+  K+ L+I  FIPV ++F  F+L++
Sbjct: 178 NLTPKVALLIQLFIPVLFAFAYFILLK 204


>AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln
           (neuronal ceroid lipofuscinosis)related protein 3.3
           protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 265 NVCTKLCLIISRFIPV*YSFDTFLLVQ 345
           N+  K+ L+I  FIPV ++F  F+L++
Sbjct: 178 NLTPKVALLIQLFIPVLFAFAYFILLK 204


>AC087081-5|AAK66038.1|  273|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.15 protein.
          Length = 273

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 264 ECLY--KVVFDYKSVHTCVILI*YISACTMQRAR 359
           EC++  KVVF+Y S +  V L+ Y +A  +Q  R
Sbjct: 171 ECIHIKKVVFEYFSFNDIVSLLPYFNAQVLQEIR 204


>Z73969-9|CAE17694.1|  244|Caenorhabditis elegans Hypothetical
           protein C12D8.13 protein.
          Length = 244

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 93  WHTYS--VFIRLIHNGLFLIFYFKYINCFFL 179
           W++Y+  V+       LF IFY   ++CF +
Sbjct: 98  WNSYNQMVYHHTFEGSLFPIFYINLVDCFMI 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,939,435
Number of Sequences: 27780
Number of extensions: 160527
Number of successful extensions: 378
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)