Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J11
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    24   0.49 
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   2.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   2.6  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        22   2.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.6  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 24.2 bits (50), Expect = 0.49
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 241 CKFVVVSPNVCTKLC 285
           CK  V+ P++C K+C
Sbjct: 32  CKRHVIKPHICRKIC 46


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 148 NIKNKPLCMRRIKTL*VCQIKLCMNNDKV 62
           N+  KPLC++      VC++    N  KV
Sbjct: 56  NVVPKPLCIKICAPGCVCRLGYLRNKKKV 84


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 148 NIKNKPLCMRRIKTL*VCQIKLCMNNDKV 62
           N+  KPLC++      VC++    N  KV
Sbjct: 56  NVVPKPLCIKICAPGCVCRLGYLRNKKKV 84


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 165 NCFFLDIHRQRL*IRKYVLFWKH 233
           +C +LD++   L   K V+F+ H
Sbjct: 3   DCLYLDVYTNSLDQSKPVMFYVH 25


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 76  SCKVLFGIPTVFLYASYI 129
           SC + F IP VF+   YI
Sbjct: 209 SCILFFLIPMVFIAVLYI 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,219
Number of Sequences: 438
Number of extensions: 1825
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)