Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_J09
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 28 0.72
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 28 0.72
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 26 2.9
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 3.9
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 25 5.1
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 25 5.1
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.1
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 6.7
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 24 8.9
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 8.9
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 24 8.9
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 24 8.9
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.9 bits (59), Expect = 0.72
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +3
Query: 6 RHSNMRYLVILVLAAVWMVEGNPMILPDNDYFDLGIHDQVLGVFPNLLTDYMKFERSVRS 185
++SN+ + I V + N ILPD+ Y + +H +P T + ERS
Sbjct: 679 KYSNVSFEKIDVAERTCTISLNAPILPDDGYAYIRLHVYFPNNYPISATPVFQLERSSAF 738
Query: 186 VGETLHHILHGNDNKHEQDDNSSK 257
E +++ + + +Q +S K
Sbjct: 739 NDEQFNYVFNTLTSISDQCISSHK 762
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.9 bits (59), Expect = 0.72
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 153 QLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPELPDTSCWSASC 1
Q D+ERL EYR++ R Q D+ +R P + D + W+ C
Sbjct: 200 QSVDAERL---AEEYREKYGRSQTVVGDTSNVPQRLLLPSVNDPNIWAVRC 247
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 210 EYGGAFHPRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESS 73
E F P F L ++ + + L+D+ L G QNS + SS
Sbjct: 275 ELPNPFVPFFDLDSKPNLSTLQDNASLTSQGSNLSSQNSGLSSSSS 320
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 3.9
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -3
Query: 107 EIKIVVIRQNHRIPFYHPNGSQHQNYQIPHVGV 9
E+++ + RQN+ + +HP S ++ H G+
Sbjct: 555 ELQLTMFRQNNMLTEFHPYSSNPSDWFTLHHGI 587
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -2
Query: 162 SCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPS 55
S + + R R P +Y +QN ++E + PS
Sbjct: 164 SARSVSERTRKRSPVSDYEEQNESEKSEEEEGYSPS 199
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 5.1
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = -2
Query: 150 LEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPELP 28
+E + P + +++ Q + S + K++P+PE+P
Sbjct: 210 IESDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEVP 250
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 5.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 222 DNKHEQDDNSSKPKHPAAEIVRKGIEHGHKGLQKITSAV 338
DN+H+Q + K +E GIEH + Q I AV
Sbjct: 557 DNQHKQQWQAPSYKPLISEFFPMGIEHFIETAQSIVMAV 595
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 6.7
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -2
Query: 201 GAFH-PRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPS-KRQPTPELP 28
G+F+ P ++S ++ + + P Y D+N + A+SS LPS P+ P
Sbjct: 114 GSFNLPNSNMSHSLNGDSTASNSSTLTPNRIYGDRNRQDYAQSSRYTLPSLPSSPSYNCP 173
Query: 27 DT 22
T
Sbjct: 174 TT 175
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 117 DQVLGVFPNLLTDYMKFERSVRSVGETLHHILHGNDN 227
+ +L VF NL+ + FE V + L I N+N
Sbjct: 72 EPILAVFINLIQESAAFEDHVSKFCQALEQIADQNNN 108
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 216 GNDNKHEQDDNSSKPKH 266
G D + E+D+N SKP+H
Sbjct: 487 GIDAEKEKDENLSKPEH 503
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 24.2 bits (50), Expect = 8.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 217 VMTTSMNRTTIVRNPSILLQRSSERVSNTDTKGCRKLRAQSKHHWEY 357
V+ + N+ TI P++ Q+ + + K +S HHWEY
Sbjct: 22 VLIDAFNKVTIDGKPNVQHQQPTYWYPPPPPRH-HKEHKKSHHHWEY 67
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 165 FERSVRSVGETLHHILHGNDNKHEQDDNSSKPK 263
F+R VG+T+ +I ++ E+D +S+ K
Sbjct: 571 FQRFGNFVGDTMRYITEEEESSEEEDLTTSRRK 603
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,381
Number of Sequences: 5004
Number of extensions: 40441
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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