Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_J09
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110... 29 1.6
12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547 29 2.2
01_02_0063 - 10746968-10747783,10747995-10748222 29 2.2
08_02_0796 - 21300251-21300373,21300846-21301721 28 2.9
08_02_0158 - 13392323-13392545,13392618-13392739 28 2.9
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168... 28 3.8
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 28 3.8
12_02_0819 + 23432681-23432998,23433118-23433348 27 5.0
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 27 5.0
12_02_0326 + 17555731-17556387 27 6.6
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188... 27 6.6
01_07_0176 - 41733845-41734834,41736058-41736588 27 6.6
01_05_0289 + 20482472-20482603,20483175-20483345,20483501-204835... 27 6.6
01_01_0646 + 4904790-4904996,4905437-4905483,4905623-4905662,490... 27 6.6
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557... 27 8.7
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977... 27 8.7
06_03_0845 + 25324209-25324443,25325267-25325313,25325420-253255... 27 8.7
02_05_1357 + 35899480-35899578,35900247-35900334,35900438-359005... 27 8.7
01_01_0443 - 3314002-3314565 27 8.7
>11_03_0150 +
10810322-10810380,10810530-10810593,10810803-10811047,
10811627-10811747,10811821-10811895,10811986-10812112,
10812194-10812939,10813065-10813195,10813547-10813636,
10814000-10814105
Length = 587
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 153 QLEDSERLRGPGHEYRDQNSRYQAESS 73
+LE SER R P YR Q+S+ Q SS
Sbjct: 421 RLESSERQRPPSQSYRPQSSQGQRPSS 447
>12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547
Length = 359
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 177 LSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPT-PELPDTSCWSASC 1
L + +ED + +G G E+ S+ ++ S +L R PT + T+ WS C
Sbjct: 169 LEPSCPASPVEDGDSNQGGGAEFGISTSKSRSISGSKVLLRNRSPTSKKAAKTTVWSRHC 228
>01_02_0063 - 10746968-10747783,10747995-10748222
Length = 347
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 117 HEYRDQNSRYQAESSDSLLPSKRQPTPE 34
HEY D + + ++ SDSLL + P PE
Sbjct: 303 HEYADNATLWDSDFSDSLLKLSQLPMPE 330
>08_02_0796 - 21300251-21300373,21300846-21301721
Length = 332
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 153 QLEDSERLRGPGHEYRDQNSRYQAESSDS 67
Q +++R+RGPGH + D + +S DS
Sbjct: 145 QSPETDRVRGPGHHHDDDAAADDDDSEDS 173
>08_02_0158 - 13392323-13392545,13392618-13392739
Length = 114
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 305 TQRAAENYERSQSTTGNINTFSIPTRHPMYV-DQLTNF 415
T R+ +N S+S TG+ N F++ HP V D + ++
Sbjct: 30 TSRSTDNSMTSRSITGSNNPFALQIEHPPVVHDDIASY 67
>07_03_0851 +
22012836-22014017,22016668-22016734,22016774-22016868,
22017304-22017717
Length = 585
Score = 27.9 bits (59), Expect = 3.8
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = -2
Query: 213 GEYGGAFHPRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSK---RQP 43
G GG F +S+ + + E E++ H YR R E L S+ +
Sbjct: 315 GSVGGTFDLHYSIWGKEGATRREQMEKIIPLDHGYR-YYIRGAMEKHLLLARSRGEGEED 373
Query: 42 TPELPDTSCWS 10
TPE PD C+S
Sbjct: 374 TPEEPDLECFS 384
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 125 DLVMNTEIKIVVIRQNHRIPFYH-PNGSQHQ 36
DL T++ IVV HRIP YH N SQ Q
Sbjct: 827 DLSRKTDLVIVVHNLAHRIPQYHQSNTSQPQ 857
>12_02_0819 + 23432681-23432998,23433118-23433348
Length = 182
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 24 YLVILVLAAVWMVEGNPMILPD--NDYFDLGIHDQVLG 131
Y V AA W V G +LP+ +FD G HDQ G
Sbjct: 73 YSAFEVAAAAWEVAGGATLLPEAMQLWFDFG-HDQGFG 109
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 384 WRVGMLNVFIFPVVL*LRS*FSAALCVRVR 295
W +G +NV IFPV L L S F LC +R
Sbjct: 35 WSLGKINVLIFPVDLFLGSYF---LCFTIR 61
>12_02_0326 + 17555731-17556387
Length = 218
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 198 LHHILHGNDNKHEQDDNSSKPKHPAA 275
LH H +HE+DDN P +PA+
Sbjct: 72 LHLQPHHPKPEHEEDDNDHNPSNPAS 97
>02_04_0460 -
23118221-23118406,23118417-23118671,23118763-23118851,
23119527-23119605,23121317-23121484,23121760-23122137
Length = 384
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 111 YRDQNSRYQAESSDSLLPSKRQPTPELP 28
Y D+ SR+++ SSD L P P +LP
Sbjct: 67 YLDELSRWESLSSDVLAPLPAAPAADLP 94
>01_07_0176 - 41733845-41734834,41736058-41736588
Length = 506
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 69 SLLPSKRQPTPELPDTSCWSASC 1
SL+P K +P P + CW C
Sbjct: 128 SLVPQKGEPRPGCGERGCWHTHC 150
>01_05_0289 +
20482472-20482603,20483175-20483345,20483501-20483530,
20483640-20483847,20483952-20484033,20484128-20484236,
20484329-20484745
Length = 382
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 15 NMRYLVILVLAAVWMVEGNPMILPDNDYFDLGIHDQVLGVFPNLLTDYMKFERSVRSV 188
N ++L + V+G +L ++ H V GV P L+ Y F SVR++
Sbjct: 69 NFKWLDGFTIQGTGTVDGQSTLLRSVSPANVSQHWYVSGVKPTLIRFYSSFNVSVRNI 126
>01_01_0646 +
4904790-4904996,4905437-4905483,4905623-4905662,
4905770-4905970,4906260-4906472,4906561-4906629,
4906711-4906840,4906934-4906974,4907063-4907287,
4907575-4907745,4908713-4908778
Length = 469
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Frame = -1
Query: 427 HTSHKISQLIYVHRMACRYA--------KRIYIPSGALTALVIFCSPLCP 302
+T ++Q I VH+ + R +R+Y S + A ++ C LCP
Sbjct: 90 NTDDTVTQKIVVHKTSARGTHFRRAGPRQRVYFQSDEVNAAIVTCGGLCP 139
>12_02_1169 -
26655170-26655332,26655429-26655504,26655603-26655715,
26655808-26655913,26656001-26656235,26656415-26656573,
26657279-26657377,26657472-26657568,26657650-26657768,
26657860-26658000,26658100-26658184,26658287-26658488,
26659274-26659379
Length = 566
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 180 SLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPT 40
SL A +Q D E++RGP + + ES + L K+Q T
Sbjct: 368 SLEASFRLSQEYDEEKVRGPPVDANHEQLSSVVESINDTLIEKKQDT 414
>09_04_0472 -
17895285-17896459,17897113-17897271,17897374-17897794,
17898520-17898552,17898902-17899384
Length = 756
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 195 TLHHILHGNDNKHEQDDNSSKPKHPAAE 278
TL ++HGN N+H D + H +AE
Sbjct: 513 TLFSLIHGNHNQHISLDTRLRIAHESAE 540
>06_03_0845 +
25324209-25324443,25325267-25325313,25325420-25325549,
25326105-25326205,25326625-25326933
Length = 273
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 249 SSKPKHPAAEIVRKGIEHGHKGLQKITSAVKAP 347
+SKPK P + G+EHG+ L T + K P
Sbjct: 59 ASKPKPPLV-LPTTGVEHGYTELMMATYSEKGP 90
>02_05_1357 +
35899480-35899578,35900247-35900334,35900438-35900592,
35900652-35900715,35902910-35902974,35903061-35903126,
35903644-35903745
Length = 212
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 262 SILLQRSSERVSNTDTKGCRKLRAQSKHHW 351
S++ + S E VS K CR L S H W
Sbjct: 86 SLISKASYENVSKKAIKSCRPLSLLSLHEW 115
>01_01_0443 - 3314002-3314565
Length = 187
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -2
Query: 219 YHGEYGGAFHPRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLL 61
+ G+ A H R S + CN + G RD+ R+ E D+++
Sbjct: 118 FMGDPSKACHVRLQASPEFKCNNPTNINYSSIEGASLRDEGKRWTGEGYDNVM 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,809,337
Number of Sequences: 37544
Number of extensions: 264076
Number of successful extensions: 893
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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