Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J07
         (217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    29   0.11 
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    23   4.1  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    23   5.5  
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    23   7.2  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -1

Query: 181 NKYLFT*RVSLASSFHKISQSFFLE*EYILKEIP-YTQLGIYTLVISRLVFFSI 23
           NKY F   + + + F K +  +FL    I++ IP ++  G YT +I  L+F SI
Sbjct: 242 NKYNFV-PLQIIAQFSKTANCYFLLIA-IMQMIPGWSTTGTYTTIIPLLIFISI 293


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 64  IYTLVISRLVFFSILNNTLV 5
           +YT VI  + F+SIL++ LV
Sbjct: 288 LYTSVIPLIYFYSILSHLLV 307


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 145 MQVKLFK*TSIYLLILVTIRHVKT 216
           +Q +LFK T  Y   ++TIRH+++
Sbjct: 252 LQDELFKSTEEYEQQMITIRHLES 275


>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 70  IVYKESLLKYTLTLKKN 120
           ++YK+  L YT TL+KN
Sbjct: 75  LMYKKCKLIYTRTLRKN 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,703
Number of Sequences: 5004
Number of extensions: 7862
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)