Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J06
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    96   9e-22
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   1.1  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    24   4.5  
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces...    24   4.5  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    23   7.9  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    23   7.9  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 96.3 bits (229), Expect = 9e-22
 Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
 Frame = +2

Query: 23  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSK-MYVVCGAI 199
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G +
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59

Query: 200 RLMGESDDCIVRLTKKDGIL 259
           R  GESDDCI RLT +DG+L
Sbjct: 60  RSKGESDDCINRLTTQDGLL 79


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 137 RPLSRAAPMRGPSHGSDDYSPSISLGS 57
           +P  R+     PS+  +D+ PS SLGS
Sbjct: 407 QPQGRSPNEHSPSNHPEDFPPSFSLGS 433


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -2

Query: 230 LCSRRT--LPSSEWLHRPRTSWRSQQHVRLQGPRPLSRA-APMRG 105
           LC+ RT  +   + L++P+  W+ ++H+       LSRA A ++G
Sbjct: 135 LCTLRTAQILKQQALNQPKCIWKLEKHISKPKLLNLSRAQADLKG 179


>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 276

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 133 RYHELHRCVVLRMDQTITRRAFPWAVQVNEFTSVVLHFV 17
           ++HEL+RC+V  +D        P      E  S VL ++
Sbjct: 211 KFHELNRCIVQLIDDFNMVNFLPLESGNEESVSRVLSYI 249


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 84  LLAEHFLGQYKSTNSPASFCILCI*AS 4
           +L EH+ G++    SP   CI+ + A+
Sbjct: 582 ILTEHYAGKWPFWMSPRQVCIIPVSAA 608


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 145 RVHVRYHELHRCVVLRMDQTI 83
           R+ +  H+L +C+ + +DQ I
Sbjct: 129 RLPINLHKLEKCLTIPLDQNI 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,614
Number of Sequences: 5004
Number of extensions: 23712
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)