Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J06
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...   109   3e-25
Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical pr...    29   0.66 
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    29   0.87 
Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    26   4.7  
U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily ass...    26   4.7  
L15313-6|AAA28198.1|  491|Caenorhabditis elegans Leucine aminope...    26   4.7  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    26   4.7  
Z92829-10|CAB07350.2|  319|Caenorhabditis elegans Hypothetical p...    26   6.2  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    26   6.2  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    26   6.2  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    26   6.2  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    26   6.2  
Z75531-3|CAA99799.1|  172|Caenorhabditis elegans Hypothetical pr...    25   8.1  
AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidas...    25   8.1  
AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical ...    25   8.1  
AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical ...    25   8.1  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score =  109 bits (263), Expect = 3e-25
 Identities = 51/83 (61%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
 Frame = +2

Query: 23  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADSSKMYVVCGAI 199
           MQNDAG+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y +CGAI
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 200 RLMGESDDCIVRLTKKDGILAKN 268
           R MGESDD I+RL +KDG++ ++
Sbjct: 61  RRMGESDDAILRLAQKDGLVPRD 83


>Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical
           protein T25E12.4b protein.
          Length = 220

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 137 VDPATGRAADSSKMYVVCGAIRLMGESDDCIVRLTKKDG 253
           V  + G  + SS   +   A R++G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 179 TSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRRSAFCV 15
           +S   + H    GPRP     P R P       +P+ S       IH+RR  +C+
Sbjct: 35  SSGEGRGHHHKHGPRPPRPNRPPRPPPATPPPTTPAPSCPGGWSLIHRRRGPWCI 89


>Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical
           protein R10D12.2 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 96  WIRRLLAEHFLGQYKSTNSPASFCILC 16
           WI  +L    L  Y  TN  A  C++C
Sbjct: 30  WINLILVSFTLNNYDQTNEVARTCLVC 56


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 192 PQTTYILEESAARPVAGSTSAITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASFCIL 19
           PQ+ +    S      GS S    C  AW   WI+    E  + + +  N+ ++  +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLL 849


>U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 38 protein.
          Length = 542

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 197 IRLMGESDDCIVRLTKKDGI 256
           I+L G SD CIV  T  DG+
Sbjct: 425 IKLQGPSDVCIVSWTTNDGV 444


>L15313-6|AAA28198.1|  491|Caenorhabditis elegans Leucine
           aminopeptidase protein 1 protein.
          Length = 491

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 226 AVVGLSHQANGSTDHVHL---GGVSSTSGCRVHVR 131
           A V LSH+  GST+H+ L   G V  T G ++  +
Sbjct: 232 AFVVLSHEVPGSTEHIALVGKGVVYDTGGLQIKTK 266


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 192 PQTTYILEESAARPVAGSTSAITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASFCIL 19
           PQ+ +    S      GS S    C  AW   WI+    E  + + +  N+ ++  +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLL 849


>Z92829-10|CAB07350.2|  319|Caenorhabditis elegans Hypothetical
           protein F10A3.15 protein.
          Length = 319

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 141 STSAITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASFCILCI*AS 4
           ST+ I       S+  +  +LA HF  +Y S  SP++  I  + A+
Sbjct: 89  STAQIALAILCSSYGLVLTMLAIHFFYRYLSVKSPSNLSIFSLKAA 134


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 108 WSFAWIRRLLAEHFLGQYKS 49
           W+ AW+RR++ E   G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = -2

Query: 221 RRTLPSSEWLHRPRTSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRI 42
           RR++   +     R   RS +  R +   P  R    R P       SPS+    + QR 
Sbjct: 272 RRSVERQDQREDRRDRRRSPEDPRERRRSPEDRTVRRRSPERRRQQRSPSVERRKSPQRR 331

Query: 41  HQRR 30
            +RR
Sbjct: 332 DERR 335


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
           protein Y18D10A.13 protein.
          Length = 2417

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 121 LHRC--VVLRMDQTITRRAFPWAV 56
           L RC  VVLR D ++ RR + W +
Sbjct: 276 LRRCLFVVLRRDMSLNRRLYTWLI 299


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 2417

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 121 LHRC--VVLRMDQTITRRAFPWAV 56
           L RC  VVLR D ++ RR + W +
Sbjct: 276 LRRCLFVVLRRDMSLNRRLYTWLI 299


>Z75531-3|CAA99799.1|  172|Caenorhabditis elegans Hypothetical
           protein C54D10.3 protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +2

Query: 59  CPRKCS----ASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIRLMGESDDC 226
           CP+ C+     +N   +  +  S    +  V+P+TG +  ++K Y+   +I L    D C
Sbjct: 106 CPKTCNRCSGGNNNNNNNNNGGSSSSCVDKVNPSTGVSECAAKAYLCTNSIYLSLMKDQC 165


>AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 512

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = -2

Query: 206 SSEWLHRPRTSWRSQQHVRLQGPRP 132
           +S W+H     W    H+R+    P
Sbjct: 412 NSTWVHNRENGWLQSSHMRISASNP 436


>AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical
           protein Y70D2A.2 protein.
          Length = 512

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = -2

Query: 206 SSEWLHRPRTSWRSQQHVRLQGPRP 132
           +S W+H     W    H+R+    P
Sbjct: 412 NSTWVHNRENGWLQSSHMRISASNP 436


>AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical
           protein C41D11.4 protein.
          Length = 330

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 225 QSSDSPIKRMAPQTTYILEESAARPVAGSTS 133
           Q   +PI+++AP++   LE+    P+  S+S
Sbjct: 73  QDHQTPIRKLAPESIPSLEDQVTPPMRRSSS 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,442,381
Number of Sequences: 27780
Number of extensions: 142560
Number of successful extensions: 539
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)