Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J05
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    32   0.020
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    26   1.7  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    25   3.0  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    24   5.2  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    24   5.2  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    24   5.2  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   6.8  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    24   6.8  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 32.3 bits (70), Expect = 0.020
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 300 RGTWDRRVMARPDQS*PTYRTGPTQLPRIQTGYRSLESV 184
           +GTWDR+ +  P    P+    P+ +PR Q G +S+E++
Sbjct: 507 KGTWDRQSLPPPQ---PSISRRPSVIPRPQEGSKSMEAI 542


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 68  DGRHGSRKHPVYSI 27
           DG HG  +HPVY I
Sbjct: 191 DGAHGVHEHPVYDI 204


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 91  WFASKDFTMVDMALANTLCIV 29
           W  S + T VD++LAN + +V
Sbjct: 217 WLRSTNITKVDLSLANVISLV 237


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 80  EGFHDGRHGSRKHPVYSIFFMAI 12
           E  HDG       PVYS+F   +
Sbjct: 83  ENLHDGDGNVNSSPVYSLFLACV 105


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 245 IELVRRSFPGYRRDIVHLSRCQLITFVYFNPRRVFHSSQSC 123
           +++V    P +RR I  LS C  + ++ F+   + H + SC
Sbjct: 59  LKIVGLHCPFHRRGIASLSVCVALHWIAFSCSVMCHFAWSC 99


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 204 IPSVSWEAASDQFYTLAMTDPDAPSRADPKFREWH 308
           IP+V++EA  D+     +  P  P   D +   WH
Sbjct: 298 IPTVTFEAPGDRMAARRLHLPMPPGLPDEESLVWH 332


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 171 GNELTPTQVNDIPSVSWEAASDQFYTLAMTDP 266
           GN    T VND  S  W   +  ++ +   DP
Sbjct: 233 GNVSKTTSVNDFWSRDWHVCTKPYFRVIAWDP 264


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 298 RNLGSARDGASGSVIANV*NWSDAASQDTDGISFT*VGVSSLPSFTSTPD 149
           RNLG A + +  S+++ V N +  +S+D+   S   VG   L  F +  D
Sbjct: 324 RNLGLALEKSYASLLSKVANHTAKSSEDSSN-SVEFVGDPPLERFLTVSD 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,473
Number of Sequences: 5004
Number of extensions: 27702
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)