Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J05
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   6.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = -3

Query: 324 WRRASDATRGTWDRRVMARPDQS*PTYRTGPTQLPRIQTGYRSLESVS 181
           W++A+  T G +    ++ PD S          + +   GY   E+V+
Sbjct: 712 WKKAAGDTPGDYTDLKLSNPDISVEDGTLSINNIQKTNEGYYLCEAVN 759


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
          protein.
          Length = 430

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 75 ISRWSTWLSQTPCV*YFFY 19
          I +W T   Q P +  FF+
Sbjct: 22 IQKWGTQFGQAPLLERFFW 40


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 317 EPVMPLAELGIGA*WRVRI 261
           + + PLA LG+G   RV +
Sbjct: 365 QDLRPLATLGVGGFGRVEL 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,455
Number of Sequences: 438
Number of extensions: 1883
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)