Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J04
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    91   5e-20
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    48   4e-07
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    48   4e-07
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    24   5.3  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    24   5.3  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    24   5.3  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    24   7.0  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    23   9.2  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 90.6 bits (215), Expect = 5e-20
 Identities = 39/41 (95%), Positives = 41/41 (100%)
 Frame = +3

Query: 39  FTAMFRRKAFLHWYTGEGMDEMEFTDAESNMNDLVSEYQQY 161
           F+AMFRRKAFLHWYTGEGMDEMEFT+AESNMNDLVSEYQQY
Sbjct: 385 FSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 48.0 bits (109), Expect = 4e-07
 Identities = 17/40 (42%), Positives = 29/40 (72%)
 Frame = +3

Query: 39  FTAMFRRKAFLHWYTGEGMDEMEFTDAESNMNDLVSEYQQ 158
           F  M+ ++AF+HWY GEGM+E EF++A  ++  L  +Y++
Sbjct: 399 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 48.0 bits (109), Expect = 4e-07
 Identities = 17/40 (42%), Positives = 29/40 (72%)
 Frame = +3

Query: 39  FTAMFRRKAFLHWYTGEGMDEMEFTDAESNMNDLVSEYQQ 158
           F  M+ ++AF+HWY GEGM+E EF++A  ++  L  +Y++
Sbjct: 395 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 101 LVHALAGVPVQESLASEHSGEPSNRIRAARGIH 3
           ++  L   P Q +L+ +HS +  NR    R IH
Sbjct: 432 IIELLVNYPKQMALSGKHSRDLFNRRGELRNIH 464


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 288 CYSKK*RFIMAWTILG 241
           C+ KK R I+ W ILG
Sbjct: 6   CFLKKYRLILLWCILG 21


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 99  EMEFTDAESNMNDLVSEYQQY 161
           E +F+++ESN ND    Y +Y
Sbjct: 560 ECQFSNSESNKNDFEKWYTRY 580


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 256 CHYKSLLFRVTLRIPVTMLSN 318
           C+ K ++FR    +P+T L N
Sbjct: 16  CYNKRVIFRANYLVPLTWLKN 36


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 83  GVPVQESLASEHSGEPSNRI 24
           G+PVQE + +    +P NR+
Sbjct: 418 GIPVQERIVNIGPNKPENRV 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,005,060
Number of Sequences: 5004
Number of extensions: 12284
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)