Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J03
         (277 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   1.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   1.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   3.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   4.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   6.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   6.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   6.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   6.5  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 9   PKRCRRVTMAQLKWQS 56
           P R RRVT   L WQS
Sbjct: 56  PLRHRRVTCDVLSWQS 71


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 17  VPESNDGPVKVAVGKNFKE 73
           VPES DGP  V++    +E
Sbjct: 123 VPESRDGPPSVSLSSPPRE 141


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 79  HRQRPGRSRRVLRAVVRTLSETDA 150
           H + PGR+  +LRA   +++E ++
Sbjct: 110 HSRLPGRNFNLLRADANSVNELES 133


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 198 SL*STRQPTTGRNLSTTCLVSQP 266
           S+   R P++ R+ S + L SQP
Sbjct: 31  SIVDRRSPSSSRSPSPSLLTSQP 53


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +1

Query: 235 ISVRRVWFPNH 267
           +S++  WFP H
Sbjct: 167 VSIKDPWFPRH 177


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 208 RRDSQRLAEISVRRVW 255
           RR S+RLA + +  VW
Sbjct: 149 RRRSKRLAGLMIVAVW 164


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 179 KDEDVDIVIIDATANDW 229
           KDE  D+V ++ + N W
Sbjct: 683 KDEAKDLVSVNKSWNKW 699


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 179 KDEDVDIVIIDATANDW 229
           KDE  D+V ++ + N W
Sbjct: 683 KDEAKDLVSVNKSWNKW 699


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 179 KDEDVDIVIIDATANDW 229
           KDE  D+V ++ + N W
Sbjct: 683 KDEAKDLVSVNKSWNKW 699


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,591
Number of Sequences: 438
Number of extensions: 1269
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)