Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J02
         (106 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    60   3e-11
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    60   3e-11
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    23   7.1  
SPBC83.06c |||mitochondrial ribosomal protein subunit L36|Schizo...    22   9.3  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    22   9.3  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 60.5 bits (140), Expect = 3e-11
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = +3

Query: 18  RRPVRCYRYCKNKPYPKSRFCRGVPDPKI 104
           RRP RCYRYCKNKPYPKSR+ R VPD KI
Sbjct: 3   RRPARCYRYCKNKPYPKSRYNRAVPDSKI 31


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 60.5 bits (140), Expect = 3e-11
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = +3

Query: 18  RRPVRCYRYCKNKPYPKSRFCRGVPDPKI 104
           RRP RCYRYCKNKPYPKSR+ R VPD KI
Sbjct: 3   RRPARCYRYCKNKPYPKSRYNRAVPDSKI 31


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 70  DLGYGLFLQYR*HLTGRRTH 11
           D+ YGLF + + HL    TH
Sbjct: 734 DINYGLFSETKAHLLYPNTH 753


>SPBC83.06c |||mitochondrial ribosomal protein subunit
          L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 59

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 12 WVRRPVRCYRYCKNKPYPKSR 74
          +VRR  R Y  CK  P  K+R
Sbjct: 37 FVRRKGRLYVLCKKHPRHKTR 57


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 62  IRFILTISITSHW 24
           ++FILTIS   HW
Sbjct: 72  LQFILTISYLVHW 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,335
Number of Sequences: 5004
Number of extensions: 4905
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 16
effective length of database: 2,282,414
effective search space used: 41083452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)