Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J02
         (106 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624...    64   2e-11
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407...    61   1e-10
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...    55   9e-09
10_02_0180 + 6292190-6292654,6293923-6294915                           29   0.51 

>11_01_0740 +
           6243517-6243526,6244822-6245323,6245415-6245496,
           6245741-6245821
          Length = 224

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 25/29 (86%), Positives = 26/29 (89%)
 Frame = +3

Query: 18  RRPVRCYRYCKNKPYPKSRFCRGVPDPKI 104
           RRP RCYR  KNKPYPKSR+CRGVPDPKI
Sbjct: 3   RRPARCYRQIKNKPYPKSRYCRGVPDPKI 31


>03_02_0897 -
           12239375-12239458,12240035-12240116,12240213-12240714,
           12241150-12241303,12241458-12241629,12242237-12242443,
           12242926-12243323
          Length = 532

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +3

Query: 24  PVRCYRYCKNKPYPKSRFCRGVPDPKI 104
           PVRCYR  KNKPYPKSR+CRGVPDPKI
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKI 338


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score = 54.8 bits (126), Expect = 9e-09
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +3

Query: 33  CYRYCKNKPYPKSRFCRGVPDPKI 104
           CYR  KNKPYPKSR+CRGVPDPKI
Sbjct: 4   CYRQIKNKPYPKSRYCRGVPDPKI 27


>10_02_0180 + 6292190-6292654,6293923-6294915
          Length = 485

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 74  PRFRIRFILTISITSHWSAH-PLPR 3
           P  R+R ++T++    W+AH PLPR
Sbjct: 309 PDLRVRLMITMNARGRWNAHTPLPR 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,952
Number of Sequences: 37544
Number of extensions: 40802
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 255467592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)