Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J02
         (106 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...    65   7e-12
Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protei...    25   5.4  
U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score = 64.9 bits (151), Expect = 7e-12
 Identities = 26/29 (89%), Positives = 26/29 (89%)
 Frame = +3

Query: 18  RRPVRCYRYCKNKPYPKSRFCRGVPDPKI 104
           RRP RCYRY KNKPYPKSRFCRGVPD KI
Sbjct: 3   RRPARCYRYIKNKPYPKSRFCRGVPDAKI 31


>Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical
           protein C09H6.2b protein.
          Length = 954

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 90  AHPDKTEI*DTVYSYNIDNISLVGAPIAS 4
           AH +K  I D +   NI+ ISLVG P+++
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSA 838


>Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical
           protein C09H6.2a protein.
          Length = 982

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 90  AHPDKTEI*DTVYSYNIDNISLVGAPIAS 4
           AH +K  I D +   NI+ ISLVG P+++
Sbjct: 840 AHSNKLNIGDQII--NINGISLVGLPLSA 866


>AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protein
           protein.
          Length = 954

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 90  AHPDKTEI*DTVYSYNIDNISLVGAPIAS 4
           AH +K  I D +   NI+ ISLVG P+++
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSA 838


>U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical
          protein F13H8.2 protein.
          Length = 929

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 21 RPVRCYRYCKNKP 59
          +P+ C R C+NKP
Sbjct: 61 KPISCVRQCENKP 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,340
Number of Sequences: 27780
Number of extensions: 30834
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 12,740,198
effective HSP length: 16
effective length of database: 12,295,718
effective search space used: 221322924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)