Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J01
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    27   1.1  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   3.4  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   3.4  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   3.4  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    24   7.9  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    24   7.9  

>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 277 PHREDLPLFAVCSRP 233
           PH+EDL L  +CS+P
Sbjct: 265 PHKEDLTLVEMCSKP 279


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 330 LAHVVSLSHQDSPSWLVFPIE 268
           + H ++ SH DS ++ VFPIE
Sbjct: 209 IPHGLTYSHTDSSTYKVFPIE 229


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 355 SLP*GALAPRTRRVTLPSGQPLVAGLPHREDLPLFAVCSRPS 230
           SLP GA A      + P   PL AG+P    LP  A    P+
Sbjct: 438 SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 183 VYKSIYIGIRVVFYEDDGR 239
           +YKS+Y+ I+  +Y   GR
Sbjct: 715 IYKSVYVSIQPSYYRSAGR 733


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 325  TRRVTLPSGQPLVAGLPHREDLPLFAVCSR 236
            T   TL    PL AGLP   DLP + + SR
Sbjct: 1300 TSFATLVKLVPLEAGLPDPPDLPQYLLDSR 1329


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 342 ELLPLAHVVSLSHQDSPSWLVFPIEKTFLCLPSVPVHH 229
           E  PLA V+SLSH+   S    P    + CL  VP  H
Sbjct: 419 ETQPLAPVISLSHRAYVSLPTQPELAKYHCL-IVPTGH 455


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 212 PNTNVDGFVDVDRASAGGVGQRSG 141
           P  ++DG  ++D    GG  Q SG
Sbjct: 501 PEPSIDGLTNLDDVQVGGFVQGSG 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,548
Number of Sequences: 5004
Number of extensions: 30457
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)