Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_J01
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721... 27 3.2
01_06_0226 - 27684093-27685091 27 3.2
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 27 4.2
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416 27 5.6
12_01_0825 - 7611594-7611728,7612061-7612276,7612505-7612589,761... 26 7.4
03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308 26 7.4
10_08_0603 - 19120434-19120538,19121209-19121310,19121430-191214... 26 9.8
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 26 9.8
02_04_0044 - 19198001-19199236 26 9.8
01_01_0390 - 3014845-3015417 26 9.8
>01_07_0230 +
42170382-42170408,42170532-42170648,42171930-42172119,
42172250-42172369,42172448-42172740,42172872-42172966,
42173075-42173181,42173514-42173602,42173809-42173895,
42174053-42174077,42174659-42174966,42175352-42175657
Length = 587
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 233 WTGTDGKQRKVFSMGKTSHEGLS*WESDTTC 325
W DGK RK+ S G +S W T C
Sbjct: 526 WASFDGKDRKLLSPGDALICSISPWPVPTAC 556
>01_06_0226 - 27684093-27685091
Length = 332
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 225 EDDGREQTANRGRSSRWGRPATRG 296
EDDG +Q+A+R SSR G A G
Sbjct: 203 EDDGSQQSASRSVSSRSGGVAAAG 226
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 78 PSFLFVFMKSNNNNKHGAVNKCLLVP 1
P+ L V +K K+G +NKC+ P
Sbjct: 587 PNILTVVLKRFQTGKYGKINKCVTFP 612
>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
Length = 1030
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 297 SPSWLVFPIEKTFLCLPSV 241
S +WL PI K+F CLP++
Sbjct: 495 SNNWLHGPIPKSFFCLPNL 513
>12_01_0825 -
7611594-7611728,7612061-7612276,7612505-7612589,
7613170-7613372,7613935-7615723,7616322-7616450,
7616825-7616928,7618725-7618779,7618860-7618975
Length = 943
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 315 SLSHQDSPSWLVFPIEKTFLCLPSV 241
S +H +SP L+ K+F+C PS+
Sbjct: 582 SPTHDESPDILLKSAAKSFICTPSI 606
>03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308
Length = 228
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 231 DGR-EQTANRGRSSRWGRPATRGCP 302
DGR TA RGR +R G GCP
Sbjct: 38 DGRGSATARRGRPARRGGGGVAGCP 62
>10_08_0603 -
19120434-19120538,19121209-19121310,19121430-19121462,
19122049-19122216,19122311-19122373,19122514-19122624,
19122926-19123035,19123150-19123446,19123632-19123710,
19123811-19123919,19124000-19124041,19124743-19124873,
19126150-19126797
Length = 665
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 188 VDVDRASAGGVGQRSGKP 135
V+V R GG G+RSG+P
Sbjct: 39 VEVGRGGGGGGGRRSGRP 56
>07_01_0736 -
5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 336 LPLAHVVSLSHQDSPSWLVFPIEKTFLCLPSVPVHH 229
LP +HV +S D PS L+F E CL V + H
Sbjct: 862 LPASHVTPVSSTDCPSGLLFVSEN---CLHLVEMVH 894
>02_04_0044 - 19198001-19199236
Length = 411
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -3
Query: 197 DGFVDVDRASAGGVGQRSGKPQILESIFYIVNAEWHIF 84
DG D+ G G+ G + S Y A WHI+
Sbjct: 9 DGEAWADQEQGNGGGRGGGGGEAKRSEIYTYEAGWHIY 46
>01_01_0390 - 3014845-3015417
Length = 190
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -3
Query: 236 SIIFIKDNPNT-NVDGFVDVDRASAGG 159
+I+ + D+P+ +VDG ++ DRA+A G
Sbjct: 137 AILLMLDHPHLPSVDGLIEEDRAAADG 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,408,874
Number of Sequences: 37544
Number of extensions: 219920
Number of successful extensions: 640
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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