Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J01
         (355 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC026321-1|AAH26321.1|  642|Homo sapiens zinc finger protein 334...    29   3.1  
BC024177-1|AAH24177.1|  680|Homo sapiens zinc finger protein 334...    29   3.1  
AL833936-1|CAD38791.1|  703|Homo sapiens hypothetical protein pr...    29   3.1  
AL354745-1|CAI12459.1|  680|Homo sapiens zinc finger protein 334...    29   3.1  
AL034424-1|CAI42502.1|  680|Homo sapiens zinc finger protein 334...    29   3.1  
AK001331-1|BAA91630.1|  680|Homo sapiens protein ( Homo sapiens ...    29   3.1  

>BC026321-1|AAH26321.1|  642|Homo sapiens zinc finger protein 334
           protein.
          Length = 642

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
 Frame = -2

Query: 270 EKTFLCLPSVPVHHL-HKRQP*YQCXXXXXXXXXXXXXXGTAIRKTSNIRVHLLYR*RGV 94
           EKTF C  ++ VH   H  +  Y+C                 I      R    Y     
Sbjct: 373 EKTFFCQSALNVHRRSHTGEKPYECSQCGKFLCTKSALIAHQITH----RGKKSYECNEC 428

Query: 93  A-YFPHPSFLFVFMKSNNNNKHGAVNKC 13
             +F H S L +  +++   KHG  NKC
Sbjct: 429 GKFFCHKSTLTIHQRTHTGEKHGVFNKC 456


>BC024177-1|AAH24177.1|  680|Homo sapiens zinc finger protein 334
           protein.
          Length = 680

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
 Frame = -2

Query: 270 EKTFLCLPSVPVHHL-HKRQP*YQCXXXXXXXXXXXXXXGTAIRKTSNIRVHLLYR*RGV 94
           EKTF C  ++ VH   H  +  Y+C                 I      R    Y     
Sbjct: 411 EKTFFCQSALNVHRRSHTGEKPYECSQCGKFLCTKSALIAHQITH----RGKKSYECNEC 466

Query: 93  A-YFPHPSFLFVFMKSNNNNKHGAVNKC 13
             +F H S L +  +++   KHG  NKC
Sbjct: 467 GKFFCHKSTLTIHQRTHTGEKHGVFNKC 494


>AL833936-1|CAD38791.1|  703|Homo sapiens hypothetical protein
           protein.
          Length = 703

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
 Frame = -2

Query: 270 EKTFLCLPSVPVHHL-HKRQP*YQCXXXXXXXXXXXXXXGTAIRKTSNIRVHLLYR*RGV 94
           EKTF C  ++ VH   H  +  Y+C                 I      R    Y     
Sbjct: 434 EKTFFCQSALNVHRRSHTGEKPYECSQCGKFLCTKSALIAHQITH----RGKKSYECNEC 489

Query: 93  A-YFPHPSFLFVFMKSNNNNKHGAVNKC 13
             +F H S L +  +++   KHG  NKC
Sbjct: 490 GKFFCHKSTLTIHQRTHTGEKHGVFNKC 517


>AL354745-1|CAI12459.1|  680|Homo sapiens zinc finger protein 334
           protein.
          Length = 680

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
 Frame = -2

Query: 270 EKTFLCLPSVPVHHL-HKRQP*YQCXXXXXXXXXXXXXXGTAIRKTSNIRVHLLYR*RGV 94
           EKTF C  ++ VH   H  +  Y+C                 I      R    Y     
Sbjct: 411 EKTFFCQSALNVHRRSHTGEKPYECSQCGKFLCTKSALIAHQITH----RGKKSYECNEC 466

Query: 93  A-YFPHPSFLFVFMKSNNNNKHGAVNKC 13
             +F H S L +  +++   KHG  NKC
Sbjct: 467 GKFFCHKSTLTIHQRTHTGEKHGVFNKC 494


>AL034424-1|CAI42502.1|  680|Homo sapiens zinc finger protein 334
           protein.
          Length = 680

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
 Frame = -2

Query: 270 EKTFLCLPSVPVHHL-HKRQP*YQCXXXXXXXXXXXXXXGTAIRKTSNIRVHLLYR*RGV 94
           EKTF C  ++ VH   H  +  Y+C                 I      R    Y     
Sbjct: 411 EKTFFCQSALNVHRRSHTGEKPYECSQCGKFLCTKSALIAHQITH----RGKKSYECNEC 466

Query: 93  A-YFPHPSFLFVFMKSNNNNKHGAVNKC 13
             +F H S L +  +++   KHG  NKC
Sbjct: 467 GKFFCHKSTLTIHQRTHTGEKHGVFNKC 494


>AK001331-1|BAA91630.1|  680|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10469 fis, clone NT2RP2000008, weakly similar to
           ZINC FINGER PROTEIN 84. ).
          Length = 680

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
 Frame = -2

Query: 270 EKTFLCLPSVPVHHL-HKRQP*YQCXXXXXXXXXXXXXXGTAIRKTSNIRVHLLYR*RGV 94
           EKTF C  ++ VH   H  +  Y+C                 I      R    Y     
Sbjct: 411 EKTFFCQSALNVHRRGHTGEKPYECSQCGKFLCTKSALIAHQITH----RGKKSYECNEC 466

Query: 93  A-YFPHPSFLFVFMKSNNNNKHGAVNKC 13
             +F H S L +  +++   KHG  NKC
Sbjct: 467 GKFFCHKSTLTIHQRTHTGEKHGVFNKC 494


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,027,311
Number of Sequences: 237096
Number of extensions: 1127391
Number of successful extensions: 6451
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6451
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)