Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J01
         (355 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   1.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   4.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   7.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   9.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 261  RSSRWGRPATRGCP 302
            RSS W RP+T+  P
Sbjct: 1902 RSSLWSRPSTQNNP 1915


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 261  RSSRWGRPATRGCP 302
            RSS W RP+T+  P
Sbjct: 1898 RSSLWSRPSTQNNP 1911


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 124 SPSSISLTRSGIFSASIISI 65
           SPS+ S+TR+G+ S    SI
Sbjct: 334 SPSNPSITRTGLSSVRDSSI 353


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 292 LVAGLPHREDLPLFAVCSRP 233
           ++AG+  +E+LP F   ++P
Sbjct: 351 MIAGMKIKEELPHFVGSNKP 370


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 161 GVGQRSGKPQILESIFYIVNAEWHIF 84
           G+G  +       +++YIV   W IF
Sbjct: 61  GIGYAAAVMSCWMNVYYIVILAWAIF 86


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 269 SMGKTSHEGLS*WESDTT 322
           S G    EGL  W+SDT+
Sbjct: 211 SSGLQPGEGLPMWKSDTS 228


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 16  FVYGAVFIVVVAFHKN 63
           +VYG +  V+ + H+N
Sbjct: 216 YVYGRISCVIASRHRN 231


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 97  SALTI*KMDSNI*GFPDRCPTPPADALSTSTNPSTLVLGLSFMK 228
           S+L+  KMD  +  +  +  T P  A    T   TL +G  F+K
Sbjct: 48  SSLSEVKMDFTLDFYFRQFWTDPRLAFKKRTGVETLSVGSEFIK 91


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 303 QDSPSWLVFPIEKTFL 256
           +D P + +F  EKT L
Sbjct: 550 RDEPKYFIFDAEKTGL 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,997
Number of Sequences: 438
Number of extensions: 1984
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)