Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I24
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 226 6e-60
01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564... 29 1.4
10_08_0211 + 15899017-15901392 29 1.8
08_01_0346 - 3063440-3064189 28 3.2
04_03_0746 + 19247529-19247723,19247808-19248000,19248145-192482... 27 4.3
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 27 5.6
06_03_0311 + 19466258-19466303,19466496-19467087,19468059-194685... 27 7.5
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 26 9.9
04_04_0603 + 26539104-26539148,26539941-26540046,26540465-265406... 26 9.9
04_03_0272 + 13725262-13725443,13726036-13726114,13726329-137263... 26 9.9
04_01_0455 - 5889132-5889462,5889583-5889611,5890112-5890141 26 9.9
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 226 bits (552), Expect = 6e-60
Identities = 111/126 (88%), Positives = 116/126 (92%)
Frame = +1
Query: 25 TNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 204
T ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEK
Sbjct: 5 TQISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEK 64
Query: 205 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 384
GRRIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 65 GRRIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 124
Query: 385 LRFIME 402
LRF+ME
Sbjct: 125 LRFVME 130
>01_06_1329 +
36354340-36354493,36355781-36355942,36356279-36356457,
36356719-36356918,36356938-36357014,36357110-36357111,
36357594-36357701,36357806-36358024,36358167-36358448
Length = 460
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -1
Query: 281 AYSSTDCSGILNRFCTTDVSSRILRPFSPS----TLCVLVAIIM 162
A++ TD +G+L+ CT DV S++ S S TLC+ II+
Sbjct: 332 AHALTDRNGLLSLLCTPDVGSKLGGRASASRYTNTLCITRTIII 375
>10_08_0211 + 15899017-15901392
Length = 791
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 119 TPVWRCVSHPYVQKSLLWPQ 178
T +W +SH +Q+S LWPQ
Sbjct: 696 TQIWAILSHCNIQESNLWPQ 715
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 322 AESLRYKLIGGLAVRRACYGVLR 390
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>04_03_0746 +
19247529-19247723,19247808-19248000,19248145-19248230,
19248861-19249028,19249445-19249738
Length = 311
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 25 TNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEI 162
T+++ RK + A L E L ELA DG + EV + SEI
Sbjct: 149 TDVNHFRKLMASKAAAANLYETLRMELAGDGIAITEVIPGVVESEI 194
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +1
Query: 85 EFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 207
+F+T ++ DG++ VE R ++ + +++ +R +G G
Sbjct: 150 QFVTAKVGNDGWAAVEKRFNQLQVDGVLLRSRFGKCIGMDG 190
>06_03_0311 +
19466258-19466303,19466496-19467087,19468059-19468524,
19470028-19470081,19470112-19470226,19470499-19470605
Length = 459
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -1
Query: 194 STLCVLVAIIMISERMGVTR 135
++LCVL+ I++ISE +GV R
Sbjct: 3 TSLCVLLCILVISEVVGVPR 22
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 104 WPRMAT-PVWRCVSHPYVQKSLLWPQGRRAC 193
WPR+ P W C SH ++ L RR C
Sbjct: 14 WPRLPRLPPWPCASHAQRRRVLRLLPPRRRC 44
>04_04_0603 +
26539104-26539148,26539941-26540046,26540465-26540603,
26540837-26540945,26541030-26541166,26541610-26541746,
26542184-26542290,26542483-26542610,26543418-26543469
Length = 319
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 107 PRMATPVWRCVSHPYVQKSLLW 172
P+ TP W V YV+KS+LW
Sbjct: 244 PKGKTP-WEDVKREYVRKSILW 264
>04_03_0272 +
13725262-13725443,13726036-13726114,13726329-13726390,
13726575-13726700,13726780-13726879,13727143-13727226,
13727328-13727462
Length = 255
Score = 26.2 bits (55), Expect = 9.9
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +1
Query: 67 FKA--ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 240
FKA E++ R+L + S VR + + M+ S+ +KG +++ S ++
Sbjct: 138 FKAHVEIHVSNKRQLLGEEISNFTVRDLQLLQNQVEMSLH--SIRNKKGSLVQKENSELR 195
Query: 241 KRFNIPEQ-SVELY 279
K+FNI Q ++EL+
Sbjct: 196 KKFNIAHQRNIELH 209
>04_01_0455 - 5889132-5889462,5889583-5889611,5890112-5890141
Length = 129
Score = 26.2 bits (55), Expect = 9.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 183 RPCGHNNDF*TYGCDTHLHTGVAILGQLPREELIELRLKNSITD 52
R GHN+ YG +TH ++GV G+ + E +L S TD
Sbjct: 60 RTDGHNHA--AYGANTHSNSGVMNKGENSGADSNERKLMVSTTD 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,978,992
Number of Sequences: 37544
Number of extensions: 219177
Number of successful extensions: 509
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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