Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I24
(404 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14992-1|AAB60338.1| 243|Homo sapiens ribosomal protein S3 prot... 235 4e-62
U14991-1|AAB60337.1| 243|Homo sapiens ribosomal protein S3 prot... 235 4e-62
U14990-1|AAB60336.1| 243|Homo sapiens ribosomal protein S3 prot... 235 4e-62
BC100284-1|AAI00285.1| 243|Homo sapiens ribosomal protein S3 pr... 235 4e-62
BC071917-1|AAH71917.1| 243|Homo sapiens ribosomal protein S3 pr... 235 4e-62
BC034149-1|AAH34149.1| 243|Homo sapiens ribosomal protein S3 pr... 235 4e-62
BC003137-1|AAH03137.1| 243|Homo sapiens ribosomal protein S3 pr... 235 4e-62
AY791291-1|AAV40835.1| 243|Homo sapiens ribosomal protein S3 pr... 235 4e-62
AB061838-1|BAB79476.1| 243|Homo sapiens ribosomal protein S3 pr... 235 4e-62
S42658-1|AAB19349.2| 243|Homo sapiens S3 ribosomal protein prot... 234 9e-62
AK223048-1|BAD96768.1| 243|Homo sapiens ribosomal protein S3 va... 233 1e-61
X55715-1|CAA39248.1| 243|Homo sapiens protein ( Human Hums3 mRN... 233 2e-61
BC013196-1|AAH13196.1| 242|Homo sapiens Unknown (protein for IM... 233 2e-61
BC003577-1|AAH03577.1| 242|Homo sapiens Unknown (protein for IM... 233 2e-61
BC071669-1|AAH71669.1| 117|Homo sapiens RPS3 protein protein. 211 6e-55
L16016-1|AAA18095.1| 95|Homo sapiens ribosomal protein S3 prot... 169 2e-42
BC150501-1|AAI50502.1| 133|Homo sapiens Unknown (protein for IM... 126 2e-29
AF281313-1|AAF82383.1| 158|Homo sapiens ribosomal protein S3 pr... 89 4e-18
X56687-1|CAA40016.1| 727|Homo sapiens autoantigen NOR-90 protein. 32 0.63
X53461-1|CAA37548.1| 764|Homo sapiens protein ( Human mRNA for ... 32 0.63
X53390-1|CAA37469.1| 764|Homo sapiens protein ( Human mRNA for ... 32 0.63
U65487-1|AAC51239.1| 654|Homo sapiens ribosomal RNA upstream bi... 32 0.63
BC042297-1|AAH42297.1| 727|Homo sapiens upstream binding transc... 32 0.63
M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein ... 29 5.9
BC113120-1|AAI13121.1| 589|Homo sapiens HDLBP protein protein. 29 5.9
BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein. 29 5.9
BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotei... 29 5.9
AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens ... 29 5.9
AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein. 29 5.9
>U14992-1|AAB60338.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 235 bits (575), Expect = 4e-62
Identities = 115/128 (89%), Positives = 121/128 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>U14991-1|AAB60337.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 235 bits (575), Expect = 4e-62
Identities = 115/128 (89%), Positives = 121/128 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>U14990-1|AAB60336.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 235 bits (575), Expect = 4e-62
Identities = 115/128 (89%), Positives = 121/128 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>BC100284-1|AAI00285.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 235 bits (575), Expect = 4e-62
Identities = 115/128 (89%), Positives = 121/128 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>BC071917-1|AAH71917.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 235 bits (575), Expect = 4e-62
Identities = 115/128 (89%), Positives = 121/128 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>BC034149-1|AAH34149.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 235 bits (575), Expect = 4e-62
Identities = 115/128 (89%), Positives = 121/128 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>BC003137-1|AAH03137.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 235 bits (575), Expect = 4e-62
Identities = 115/128 (89%), Positives = 121/128 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>AY791291-1|AAV40835.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 235 bits (575), Expect = 4e-62
Identities = 115/128 (89%), Positives = 121/128 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>AB061838-1|BAB79476.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 235 bits (575), Expect = 4e-62
Identities = 115/128 (89%), Positives = 121/128 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>S42658-1|AAB19349.2| 243|Homo sapiens S3 ribosomal protein
protein.
Length = 243
Score = 234 bits (572), Expect = 9e-62
Identities = 114/128 (89%), Positives = 121/128 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISK+RKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKRRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>AK223048-1|BAD96768.1| 243|Homo sapiens ribosomal protein S3
variant protein.
Length = 243
Score = 233 bits (571), Expect = 1e-61
Identities = 114/128 (89%), Positives = 121/128 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAE+VATRGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>X55715-1|CAA39248.1| 243|Homo sapiens protein ( Human Hums3 mRNA
for 40S ribosomal protein s3. ).
Length = 243
Score = 233 bits (570), Expect = 2e-61
Identities = 114/128 (89%), Positives = 120/128 (93%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 378
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAE LRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAECLRYKLLGGLAVRRACY 120
Query: 379 GVLRFIME 402
GVLRFIME
Sbjct: 121 GVLRFIME 128
>BC013196-1|AAH13196.1| 242|Homo sapiens Unknown (protein for
IMAGE:4347401) protein.
Length = 242
Score = 233 bits (570), Expect = 2e-61
Identities = 114/127 (89%), Positives = 120/127 (94%)
Frame = +1
Query: 22 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 201
A ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLGE
Sbjct: 1 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 60
Query: 202 KGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 381
KGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYG
Sbjct: 61 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 120
Query: 382 VLRFIME 402
VLRFIME
Sbjct: 121 VLRFIME 127
>BC003577-1|AAH03577.1| 242|Homo sapiens Unknown (protein for
IMAGE:3544292) protein.
Length = 242
Score = 233 bits (570), Expect = 2e-61
Identities = 114/127 (89%), Positives = 120/127 (94%)
Frame = +1
Query: 22 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 201
A ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLGE
Sbjct: 1 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 60
Query: 202 KGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 381
KGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYG
Sbjct: 61 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 120
Query: 382 VLRFIME 402
VLRFIME
Sbjct: 121 VLRFIME 127
>BC071669-1|AAH71669.1| 117|Homo sapiens RPS3 protein protein.
Length = 117
Score = 211 bits (516), Expect = 6e-55
Identities = 104/117 (88%), Positives = 110/117 (94%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 369
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>L16016-1|AAA18095.1| 95|Homo sapiens ribosomal protein S3
protein.
Length = 95
Score = 169 bits (412), Expect = 2e-42
Identities = 83/95 (87%), Positives = 88/95 (92%)
Frame = +1
Query: 19 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 198
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 199 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRG 303
EKGRRIRELT+VVQKRF PE SVELYAEKVATRG
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRG 95
>BC150501-1|AAI50502.1| 133|Homo sapiens Unknown (protein for
IMAGE:40134452) protein.
Length = 133
Score = 126 bits (305), Expect = 2e-29
Identities = 61/67 (91%), Positives = 64/67 (95%)
Frame = +1
Query: 202 KGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 381
+GRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYG
Sbjct: 6 QGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 65
Query: 382 VLRFIME 402
VLRFIME
Sbjct: 66 VLRFIME 72
>AF281313-1|AAF82383.1| 158|Homo sapiens ribosomal protein S3
protein.
Length = 158
Score = 89.4 bits (212), Expect = 4e-18
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 274 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 402
LYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIME
Sbjct: 1 LYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 43
>X56687-1|CAA40016.1| 727|Homo sapiens autoantigen NOR-90 protein.
Length = 727
Score = 32.3 bits (70), Expect = 0.63
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +1
Query: 22 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 201
ATN SKK KF G+ K +N + ++ +++ S E+ P++ ++ + +R Q +
Sbjct: 517 ATNSSKKMKFQGEPK-KPPMNGY--QKFSQELLSNGELNHLPLKERMVEIGSRWQRISQS 573
Query: 202 KGRRIRELTSVVQKRFNI 255
+ ++L QK++ +
Sbjct: 574 QKEHYKKLAEEQQKQYKV 591
>X53461-1|CAA37548.1| 764|Homo sapiens protein ( Human mRNA for
upstream binding factor (hUBF). ).
Length = 764
Score = 32.3 bits (70), Expect = 0.63
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +1
Query: 22 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 201
ATN SKK KF G+ K +N + ++ +++ S E+ P++ ++ + +R Q +
Sbjct: 554 ATNSSKKMKFQGEPK-KPPMNGY--QKFSQELLSNGELNHLPLKERMVEIGSRWQRISQS 610
Query: 202 KGRRIRELTSVVQKRFNI 255
+ ++L QK++ +
Sbjct: 611 QKEHYKKLAEEQQKQYKV 628
>X53390-1|CAA37469.1| 764|Homo sapiens protein ( Human mRNA for
upstream binding factor (hUBF). ).
Length = 764
Score = 32.3 bits (70), Expect = 0.63
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +1
Query: 22 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 201
ATN SKK KF G+ K +N + ++ +++ S E+ P++ ++ + +R Q +
Sbjct: 554 ATNSSKKMKFQGEPK-KPPMNGY--QKFSQELLSNGELNHLPLKERMVEIGSRWQRISQS 610
Query: 202 KGRRIRELTSVVQKRFNI 255
+ ++L QK++ +
Sbjct: 611 QKEHYKKLAEEQQKQYKV 628
>U65487-1|AAC51239.1| 654|Homo sapiens ribosomal RNA upstream
binding transcription factor protein.
Length = 654
Score = 32.3 bits (70), Expect = 0.63
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +1
Query: 22 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 201
ATN SKK KF G+ K +N + ++ +++ S E+ P++ ++ + +R Q +
Sbjct: 396 ATNSSKKMKFQGEPK-KPPMNGY--QKFSQELLSNGELNHLPLKERMVEIGSRWQRISQS 452
Query: 202 KGRRIRELTSVVQKRFNI 255
+ ++L QK++ +
Sbjct: 453 QKEHYKKLAEEQQKQYKV 470
>BC042297-1|AAH42297.1| 727|Homo sapiens upstream binding
transcription factor, RNA polymerase I protein.
Length = 727
Score = 32.3 bits (70), Expect = 0.63
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +1
Query: 22 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 201
ATN SKK KF G+ K +N + ++ +++ S E+ P++ ++ + +R Q +
Sbjct: 517 ATNSSKKMKFQGEPK-KPPMNGY--QKFSQELLSNGELNHLPLKERMVEIGSRWQRISQS 573
Query: 202 KGRRIRELTSVVQKRFNI 255
+ ++L QK++ +
Sbjct: 574 QKEHYKKLAEEQQKQYKV 591
>M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein
binding protein protein.
Length = 1268
Score = 29.1 bits (62), Expect = 5.9
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +1
Query: 97 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVEL 276
+E E +E V P+ E+ + + V+G+KG IR++ + ++P + EL
Sbjct: 957 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 1013
Query: 277 YAEKVATRGLCA 312
++ +A GL A
Sbjct: 1014 QSDIIAITGLAA 1025
>BC113120-1|AAI13121.1| 589|Homo sapiens HDLBP protein protein.
Length = 589
Score = 29.1 bits (62), Expect = 5.9
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +1
Query: 97 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVEL 276
+E E +E V P+ E+ + + V+G+KG IR++ + ++P + EL
Sbjct: 278 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 334
Query: 277 YAEKVATRGLCA 312
++ +A GL A
Sbjct: 335 QSDIIAITGLAA 346
>BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein.
Length = 898
Score = 29.1 bits (62), Expect = 5.9
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +1
Query: 97 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVEL 276
+E E +E V P+ E+ + + V+G+KG IR++ + ++P + EL
Sbjct: 587 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 643
Query: 277 YAEKVATRGLCA 312
++ +A GL A
Sbjct: 644 QSDIIAITGLAA 655
>BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotein
binding protein (vigilin) protein.
Length = 1268
Score = 29.1 bits (62), Expect = 5.9
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +1
Query: 97 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVEL 276
+E E +E V P+ E+ + + V+G+KG IR++ + ++P + EL
Sbjct: 957 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 1013
Query: 277 YAEKVATRGLCA 312
++ +A GL A
Sbjct: 1014 QSDIIAITGLAA 1025
>AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens
cDNA FLJ45936 fis, clone PLACE7004103, highly similar
to Vigilin. ).
Length = 847
Score = 29.1 bits (62), Expect = 5.9
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +1
Query: 97 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVEL 276
+E E +E V P+ E+ + + V+G+KG IR++ + ++P + EL
Sbjct: 640 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 696
Query: 277 YAEKVATRGLCA 312
++ +A GL A
Sbjct: 697 QSDIIAITGLAA 708
>AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.
Length = 1268
Score = 29.1 bits (62), Expect = 5.9
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +1
Query: 97 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVEL 276
+E E +E V P+ E+ + + V+G+KG IR++ + ++P + EL
Sbjct: 957 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 1013
Query: 277 YAEKVATRGLCA 312
++ +A GL A
Sbjct: 1014 QSDIIAITGLAA 1025
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,084,544
Number of Sequences: 237096
Number of extensions: 1037781
Number of successful extensions: 2135
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 2096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2135
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2985693880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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