Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I23
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    28   0.28 
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   0.84 
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   1.9  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   3.4  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    24   4.5  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    24   5.9  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    24   5.9  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    24   5.9  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   7.9  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    23   7.9  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 28.3 bits (60), Expect = 0.28
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 104 SETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQP 214
           SET  S S K+G T+RR   S    R +KLK    +P
Sbjct: 2   SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 62  VSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK 229
           ++ S   ++RG  T E V     + G T+   Y SLS+    ++K  +N P   SK
Sbjct: 189 LATSASNSDRGASTPEMVVKAEKREGSTSPIPYSSLSI--AERIKQAQNTPFLESK 242


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 303 VLSGVE*FPAFQQECTSASILFTAYL 226
           VLSG++     Q+ECT  ++L T+YL
Sbjct: 429 VLSGLQ--QLMQEECTDIAVLRTSYL 452


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 205 SWAFQLSGSSYRQTYI*PSCGTSCFWRNG 119
           SW  QLS SS+       +C  SC  RNG
Sbjct: 196 SWVVQLSFSSWNVVGDSATCLLSCSSRNG 224


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 180 LLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFANFL 73
           LL   LI+ +L +   FG T Y +S +I+  + N L
Sbjct: 27  LLVLSLIFYILYI--CFGTTSYILSGIILGAYVNSL 60


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 210 WFLGLFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFAN 79
           W L  F     +    +  ++VV   F  T+Y++  +I+ +F N
Sbjct: 345 WILPAFRILFSIFMASMSVIIVVSEVFLHTQYSLVGIILQKFTN 388


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 198 LFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFA 82
           L S R +  +  +  LL +  A+G  E   SE +IP+F+
Sbjct: 434 LRSKRSIKQEPWVRELLEIFIAYGYFEVPESEEVIPKFS 472


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = -2

Query: 159  YSLLVVHP---AFGETEYTVSEVII 94
            YSL V+H     FG+T+YT+S +++
Sbjct: 1006 YSLSVLHLDGIKFGDTQYTISGMLM 1030


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 235 GEKNGGT-RTFLLKSRKSFYPTQ 300
           G KNG T R+F  KS K   PT+
Sbjct: 315 GSKNGTTPRSFAQKSSKRIKPTE 337


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 268 AGMYECLHSFHRLFA*PRRLVSW 200
           AG +ECLH F   F+ P   + W
Sbjct: 420 AGAFECLHVFS--FSSPVNCIDW 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,824
Number of Sequences: 5004
Number of extensions: 20958
Number of successful extensions: 51
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)