Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I23
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0229 + 42161770-42164562                                         28   1.3  
10_08_0458 + 18083398-18084039                                         27   4.0  
08_01_0086 - 629043-629594                                             26   5.2  
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492...    26   5.2  
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666...    26   6.9  
06_03_0039 + 15791968-15792036,15793317-15793847,15799797-158001...    26   6.9  
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273...    25   9.2  

>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 107 ETVYSVSPKAGCTTRRLYISLSVRRTRKLKS 199
           +T  + SPKA  T R+ Y+S S+R T  LKS
Sbjct: 890 DTSVASSPKAFFTKRQPYLSSSIRYTSFLKS 920


>10_08_0458 + 18083398-18084039
          Length = 213

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 99  IIPRFANFLLLDTAGCGCGGFLRHLGLWWSPSC 1
           I+P  A   +    G G GGF  H  L  S SC
Sbjct: 22  ILPNLAALAVAAGGGSGGGGFFPHRSLLQSSSC 54


>08_01_0086 - 629043-629594
          Length = 183

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 148 CGTSCFWRNGVHRFRGHNS 92
           CG  C+WR G    RG  +
Sbjct: 134 CGDGCWWRGGAEERRGEGA 152


>07_03_1552 -
           27648193-27648307,27648384-27648431,27649140-27649234,
           27649311-27649376,27649721-27649810,27650210-27650437,
           27650572-27650605,27651106-27651611
          Length = 393

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -2

Query: 219 HDGWFLGLFSFRVLLTDKLIYSLLVVHPA---FGETEYTVSEVIIPRFANFLLLDTAGC 52
           H GW LG  +F +     L+  LLV H     F  T++T   V I  FA    +   GC
Sbjct: 133 HPGWLLGYRAFALAAAVALLVRLLVGHGIDVFFFYTQWTFLLVTI-YFAFATAISAHGC 190


>12_02_0542 -
           20166044-20166111,20166399-20166526,20166613-20166686,
           20166934-20166995,20167903-20168098,20168106-20169086
          Length = 502

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 145 GTSCFWRNGVHRFRG 101
           G  C W  GVHRF G
Sbjct: 466 GEPCAWEFGVHRFNG 480


>06_03_0039 +
           15791968-15792036,15793317-15793847,15799797-15800105,
           15800256-15800772,15800964-15801163,15801303-15801398
          Length = 573

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 147 VVHPAFGETE---YTVSEVIIPRFANFLLLDTAGCGCGGF 37
           V HP   +T    +  +++ I    ++ ++  AG GCGGF
Sbjct: 276 VAHPTHYDTPLKGFKANKIPITEIHHYAVIVNAGNGCGGF 315


>02_01_0377 +
           2728892-2729187,2729483-2729544,2730516-2730570,
           2730784-2730858,2730980-2731054,2731155-2731202,
           2731548-2732357,2732450-2732498,2733157-2733266,
           2733381-2733488,2733920-2733980
          Length = 582

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 195 KAQETNRRG*ANRR*KEWRHSYIPAEKQEIILPHSGQD 308
           K ++    G A  R +E++ SYI ++KQ+    H  +D
Sbjct: 150 KLEDDVSPGEAESRYQEYKTSYITSQKQDYFDHHKNED 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,528,579
Number of Sequences: 37544
Number of extensions: 149577
Number of successful extensions: 349
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)