Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I23
(310 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022444-1|AAH22444.1| 288|Homo sapiens ribosomal protein L6 pr... 52 3e-07
D17554-1|BAA04491.1| 288|Homo sapiens DNA-binding protein TAXRE... 52 3e-07
BC104826-1|AAI04827.1| 288|Homo sapiens ribosomal protein L6 pr... 52 3e-07
BC104824-1|AAI04825.1| 288|Homo sapiens ribosomal protein L6 pr... 52 3e-07
BC071912-1|AAH71912.1| 288|Homo sapiens ribosomal protein L6 pr... 52 3e-07
BC032299-1|AAH32299.1| 288|Homo sapiens ribosomal protein L6 pr... 52 3e-07
BC031009-1|AAH31009.1| 288|Homo sapiens ribosomal protein L6 pr... 52 3e-07
BC020679-1|AAH20679.1| 288|Homo sapiens ribosomal protein L6 pr... 52 3e-07
BC004138-1|AAH04138.1| 288|Homo sapiens ribosomal protein L6 pr... 52 3e-07
AF261087-1|AAF99680.1| 289|Homo sapiens DNA-binding protein TAX... 52 3e-07
AB042820-1|BAB17292.1| 288|Homo sapiens ribosomal protein L6 pr... 52 3e-07
S71022-1|AAB30819.1| 207|Homo sapiens neoplasm-related C140 pro... 42 5e-04
X69391-1|CAA49188.1| 288|Homo sapiens ribosomal protein L6 prot... 41 8e-04
>BC022444-1|AAH22444.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L GV R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGVGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TFLLKSRKSFYPTQD 303
L+ +YPT+D
Sbjct: 106 VVKLRKMPRYYPTED 120
>D17554-1|BAA04491.1| 288|Homo sapiens DNA-binding protein
TAXREB107 protein.
Length = 288
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TFLLKSRKSFYPTQD 303
L+ +YPT+D
Sbjct: 106 VVKLRKMPRYYPTED 120
>BC104826-1|AAI04827.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TFLLKSRKSFYPTQD 303
L+ +YPT+D
Sbjct: 106 VVKLRKMPRYYPTED 120
>BC104824-1|AAI04825.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TFLLKSRKSFYPTQD 303
L+ +YPT+D
Sbjct: 106 VVKLRKMPRYYPTED 120
>BC071912-1|AAH71912.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TFLLKSRKSFYPTQD 303
L+ +YPT+D
Sbjct: 106 VVKLRKMPRYYPTED 120
>BC032299-1|AAH32299.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TFLLKSRKSFYPTQD 303
L+ +YPT+D
Sbjct: 106 VVKLRKMPRYYPTED 120
>BC031009-1|AAH31009.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TFLLKSRKSFYPTQD 303
L+ +YPT+D
Sbjct: 106 VVKLRKMPRYYPTED 120
>BC020679-1|AAH20679.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TFLLKSRKSFYPTQD 303
L+ +YPT+D
Sbjct: 106 VVKLRKMPRYYPTED 120
>BC004138-1|AAH04138.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TFLLKSRKSFYPTQD 303
L+ +YPT+D
Sbjct: 106 VVKLRKMPRYYPTED 120
>AF261087-1|AAF99680.1| 289|Homo sapiens DNA-binding protein
TAXREB107 protein.
Length = 289
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TFLLKSRKSFYPTQD 303
L+ +YPT+D
Sbjct: 106 VVKLRKMPRYYPTED 120
>AB042820-1|BAB17292.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TFLLKSRKSFYPTQD 303
L+ +YPT+D
Sbjct: 106 VVKLRKMPRYYPTED 120
>S71022-1|AAB30819.1| 207|Homo sapiens neoplasm-related C140
product protein.
Length = 207
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +1
Query: 124 FSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTFLLKSRKSFYPTQD 303
+S+ MY +K Y V K +GG+KNGGTR L+ +YPT+D
Sbjct: 2 YSRKAMYKRK--YSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED 59
>X69391-1|CAA49188.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 115 VLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTFLLKSRKSFYP 294
+ S+ MY +K Y V K +GG+KNGGTR L+ +YP
Sbjct: 60 ICHVSRKAMYKRK--YSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYP 117
Query: 295 TQD 303
T+D
Sbjct: 118 TED 120
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,688,255
Number of Sequences: 237096
Number of extensions: 821645
Number of successful extensions: 5252
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5241
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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