Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I22
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    24   7.1  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    24   7.1  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    23   9.4  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 313 FRDGVCHNLIXPTTLNAQLLTTYYTIIIN 227
           FR+GVC NL+    L   +      ++IN
Sbjct: 327 FRNGVCRNLVCSDLLTRGIDIQAVNVVIN 355


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 171 KYKKIVSQAIRPRFARCRLLIIIV*YVVSSCALSVVGXI 287
           + K  V+ A  PRF++ RLL +IV    S+C  S  G +
Sbjct: 139 RLKDTVAYAKDPRFSKQRLLRMIV--PTSTCTSSSSGSL 175


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 212 KPGSNRLRHYFFILKTLIKNYSLKLIMWN 126
           KP   R  +Y+  +   + NYSL+ I+W+
Sbjct: 52  KPSLVRRINYYIPVLHWLPNYSLRNIIWD 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,301,390
Number of Sequences: 5004
Number of extensions: 22691
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)