Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I22
         (336 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022126-1|AAY51521.1|  712|Drosophila melanogaster IP08939p pro...    28   2.6  
AE014298-1977|AAF48333.2| 1103|Drosophila melanogaster CG32611-P...    28   2.6  
AB235207-1|BAF31332.1| 1089|Drosophila melanogaster CG32611 prot...    28   2.6  
Y17111-1|CAA76635.1| 1365|Drosophila melanogaster Nup154 protein.      27   8.0  
AF160944-1|AAD46884.1| 1365|Drosophila melanogaster Nup154 protein.    27   8.0  
AE014134-2012|AAF53050.2| 1123|Drosophila melanogaster CG4579-PB...    27   8.0  
AE014134-2011|AAF53051.1| 1365|Drosophila melanogaster CG4579-PA...    27   8.0  

>BT022126-1|AAY51521.1|  712|Drosophila melanogaster IP08939p
           protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 335 RIHHESKISRRCMSQSNSPHNTQRATTHHILHY 237
           R+HH    ++   SQ + PH+    T HH  H+
Sbjct: 421 RLHHTHHHAQHQHSQHHHPHSQHHHTPHHQQHH 453


>AE014298-1977|AAF48333.2| 1103|Drosophila melanogaster CG32611-PB
           protein.
          Length = 1103

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 335 RIHHESKISRRCMSQSNSPHNTQRATTHHILHY 237
           R+HH    ++   SQ + PH+    T HH  H+
Sbjct: 465 RLHHTHHHAQHQHSQHHHPHSQHHHTPHHQQHH 497


>AB235207-1|BAF31332.1| 1089|Drosophila melanogaster CG32611
           protein.
          Length = 1089

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 335 RIHHESKISRRCMSQSNSPHNTQRATTHHILHY 237
           R+HH    ++   SQ + PH+    T HH  H+
Sbjct: 510 RLHHTHHHAQHQHSQHHHPHSQHHHTPHHQQHH 542


>Y17111-1|CAA76635.1| 1365|Drosophila melanogaster Nup154 protein.
          Length = 1365

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 322  KVRFRDGVCHNLIXPTTLNAQLLTTYYT--IIINKRQRANRG 203
            ++RF +G+    +    L+ +LL  YY+  I +N+R  AN G
Sbjct: 1253 QLRFPEGIVPEKLVSMNLDIELLLEYYSRMISMNERVWANEG 1294


>AF160944-1|AAD46884.1| 1365|Drosophila melanogaster Nup154 protein.
          Length = 1365

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 322  KVRFRDGVCHNLIXPTTLNAQLLTTYYT--IIINKRQRANRG 203
            ++RF +G+    +    L+ +LL  YY+  I +N+R  AN G
Sbjct: 1253 QLRFPEGIVPEKLVSMNLDIELLLEYYSRMISMNERVWANEG 1294


>AE014134-2012|AAF53050.2| 1123|Drosophila melanogaster CG4579-PB,
            isoform B protein.
          Length = 1123

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 322  KVRFRDGVCHNLIXPTTLNAQLLTTYYT--IIINKRQRANRG 203
            ++RF +G+    +    L+ +LL  YY+  I +N+R  AN G
Sbjct: 1011 QLRFPEGIVPEKLVSMNLDIELLLEYYSRMISMNERVWANEG 1052


>AE014134-2011|AAF53051.1| 1365|Drosophila melanogaster CG4579-PA,
            isoform A protein.
          Length = 1365

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 322  KVRFRDGVCHNLIXPTTLNAQLLTTYYT--IIINKRQRANRG 203
            ++RF +G+    +    L+ +LL  YY+  I +N+R  AN G
Sbjct: 1253 QLRFPEGIVPEKLVSMNLDIELLLEYYSRMISMNERVWANEG 1294


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,501,441
Number of Sequences: 53049
Number of extensions: 254923
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 756348948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)