Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I21
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    36   0.001
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    24   4.3  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    24   5.6  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    23   7.5  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    23   7.5  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    23   9.9  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 35.9 bits (79), Expect = 0.001
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 35  KGFTIVYK-KAKATNKPVKNIIRRPFKAGARRSLFK--AKRLLKANHYRTDLTKATLRRA 205
           +G  ++ K   K   KP K   +      + R  +K  A R+ +   YR DL K ++ RA
Sbjct: 62  RGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTG-YRDDLVKVSVARA 120

Query: 206 SAILRSQRP 232
           SAIL SQRP
Sbjct: 121 SAILSSQRP 129


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 56  KKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANH 166
           K  +A NK +  +   PFK   RR +FK+++  K  H
Sbjct: 552 KGMQAVNKDIGFV---PFKKNNRRKVFKSRKNPKHRH 585


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 160 CL*QSLGFEKRPPRSSFEWTTDNVLYRFIGCLGLLINYREALSVRILN 17
           CL        RPP ++      N   + IG L L+ +  + LS RIL+
Sbjct: 499 CLHAIYSLVNRPPFATLGHVFHNTPMKAIGLLNLICSNVQDLSNRILH 546


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 301 NLFLQAYKLFRLSCCS 254
           N FL  + +FRL CCS
Sbjct: 11  NAFLIYFIIFRLCCCS 26


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 94  YPSSIQSWSEEVSFQSQEIAKGKSLPYRPD 183
           Y   I  +  E+SF++ E     SLPY+ +
Sbjct: 133 YSQLIMCFIREMSFENAEETLNASLPYKSE 162


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 40  LHDSL*EGQGNQ*TCKEHYPSSIQSWSEEVS 132
           +H  + +  G Q   KE +PS  +SW+++++
Sbjct: 200 IHGRITDTGGLQLISKETFPSFQESWAKKIT 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 997,670
Number of Sequences: 5004
Number of extensions: 15849
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)