Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I21
(304 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 36 0.006
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 36 0.008
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 36 0.008
09_02_0478 - 9749306-9749382,9749543-9749659,9749711-9750398,975... 29 0.92
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 27 2.8
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 27 2.8
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 26 4.9
11_08_0083 + 28256844-28258760 26 6.5
11_08_0082 + 28239159-28241237 26 6.5
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 26 6.5
05_04_0409 - 21050479-21050637,21050732-21050872,21051170-210515... 26 6.5
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 26 6.5
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 35.9 bits (79), Expect = 0.006
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +2
Query: 59 KAKATNKPV----KNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 223
K + NKP K+++R+ F+ A+ K + N+YR DLTK L R SA+ RS
Sbjct: 75 KTEKQNKPASLYHKSVMRKEFRKMAKA----VKNQVSDNYYRPDLTKPALARLSAVYRS 129
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 59 KAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 223
K K N P K + + R+ K + N+YR DLTK L R S++ RS
Sbjct: 75 KTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 59 KAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 223
K K N P K + + R+ K + N+YR DLTK L R S++ RS
Sbjct: 75 KTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>09_02_0478 -
9749306-9749382,9749543-9749659,9749711-9750398,
9750521-9751161,9751336-9751462
Length = 549
Score = 28.7 bits (61), Expect = 0.92
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 145 LGFEKRPPRSSFEWTTDNVLYRFIGC 68
L K PP+ S++WT N++Y + C
Sbjct: 243 LAESKIPPQFSYKWTARNLMYETLKC 268
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 8 TRVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGA 121
T ++EN R+GF + K NK V ++ P++ A
Sbjct: 473 TILIENMRREGFEFMIGPPKVINKTVDGKLQEPYEIAA 510
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 85 KEHYPSSIQSWSEEVS 132
K HYPS I SW E++S
Sbjct: 305 KHHYPSPIVSWIEDLS 320
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 8 TRVVENPDRKGFTIVYKKAKATNKPV 85
T V+NP + T + K K+ NKP+
Sbjct: 89 TCTVKNPSQSAMTTLISKCKSANKPL 114
>11_08_0083 + 28256844-28258760
Length = 638
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 295 FLQAYKLFRLSCC 257
FL+AYKLF +CC
Sbjct: 330 FLKAYKLFTAACC 342
>11_08_0082 + 28239159-28241237
Length = 692
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 295 FLQAYKLFRLSCC 257
FL+AYKLF +CC
Sbjct: 376 FLKAYKLFAAACC 388
>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 136 EKRPP-RSSFEWTTDNVLY 83
E RPP R SF+W+ D + Y
Sbjct: 1223 EGRPPMRHSFQWSVDKIYY 1241
>05_04_0409 -
21050479-21050637,21050732-21050872,21051170-21051541,
21051699-21051701
Length = 224
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 85 KEHYPSSIQSWSEEVSFQSQEIAKGK 162
+ H+PS+ +SW E S + GK
Sbjct: 182 RHHHPSAARSWDEPEDVASSPLGAGK 207
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -1
Query: 130 RPPRSSFEWTTDNVLYRFIGCLGLLINYREALSVRILNDPRAE 2
+P + +W T + Y ++ LIN E + V +L P ++
Sbjct: 477 QPTMKTSDWYTKSCTYSWVSLNSKLINLNEVIPVDMLQLPTSD 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,359,621
Number of Sequences: 37544
Number of extensions: 100712
Number of successful extensions: 217
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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