Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I21
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    27   2.0  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    26   4.5  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    26   4.5  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    26   4.5  
Z78066-1|CAB01521.1|  176|Caenorhabditis elegans Hypothetical pr...    26   6.0  

>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 35  KGFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRA 205
           +G TI+ ++ K   +   N+I + ++      + + K LL  +  +     ATLRRA
Sbjct: 343 QGTTIIVRRPKTERRTAHNLIEKKYRCSINDRIQQLKVLLCGDEAKLS-KSATLRRA 398


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 70  NQ*TCKEHYPSSIQSWSEEVSFQSQEIAKGKSL 168
           N+  C++ + S +QS    + F SQEI + +S+
Sbjct: 651 NESPCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 70  NQ*TCKEHYPSSIQSWSEEVSFQSQEIAKGKSL 168
           N+  C++ + S +QS    + F SQEI + +S+
Sbjct: 651 NESPCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 70  NQ*TCKEHYPSSIQSWSEEVSFQSQEIAKGKSL 168
           N+  C++ + S +QS    + F SQEI + +S+
Sbjct: 651 NESPCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


>Z78066-1|CAB01521.1|  176|Caenorhabditis elegans Hypothetical
           protein W06A7.2 protein.
          Length = 176

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 96  IMFFTGLLVALAFL*TIVKPFLSGFSTTLVP 4
           ++FF G+++ LA L T +    +G ++ L+P
Sbjct: 46  LLFFFGVIILLAMLLTCIAIECAGVASALIP 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,424,295
Number of Sequences: 27780
Number of extensions: 85573
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)