Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I20
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    26   1.6  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   2.1  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   2.7  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   2.7  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   4.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   8.3  

>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 157 HPPLVDTIRTLHGATCYQNK 216
           H P V T  TL    CYQNK
Sbjct: 96  HDPSVHTAATLASEMCYQNK 115


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 196 ATCYQNKIEEVRHQKE 243
           +T YQ +IEEVR++KE
Sbjct: 114 STSYQKEIEEVRNEKE 129


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 354 IYGVYFSPFLLPHSSWTSSNLAPILLRAITAE 259
           I GVY S    PH  ++SS+L  I LR    E
Sbjct: 116 IEGVYDSEEEAPHMLFSSSSLLSIFLRKCVVE 147


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 179 IVSTKGG*VSLMLGEXDHP-YLSRAVS 102
           +VSTK   V+++L E  HP YL +AVS
Sbjct: 184 LVSTKKSIVTILLNEVLHPFYLFQAVS 210


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 200 HVTKTKLKRYVIKKRWAKAVSAVIALKRMGAKFEDVHEEC 319
           HV    L  + +K+   K ++    L  +  KF+D+ ++C
Sbjct: 394 HVEDLSLPCFAVKEDSLKRITQETLLGLLDGKFKDIFDKC 433


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 267  TAETAFAHLFLMTYLFN 217
            T  T +A++ +MTY+FN
Sbjct: 3475 TFTTQYAYMIIMTYVFN 3491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,493,121
Number of Sequences: 5004
Number of extensions: 26895
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)