Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I20
         (362 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0068 - 3832858-3833228,3835773-3836223                           31   0.28 
02_02_0330 + 9010814-9010884,9010991-9011123,9011204-9011252,901...    29   1.5  
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106...    27   3.4  
06_01_0294 + 2151131-2151529                                           27   3.4  
05_06_0174 - 26149663-26149885,26150353-26151701                       27   3.4  
01_06_1236 + 35613123-35613816,35615809-35615952,35616032-356161...    27   4.5  
03_02_0289 - 7115045-7115867,7116373-7116929,7117327-7117544,711...    26   7.9  
03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216           26   7.9  

>09_02_0068 - 3832858-3833228,3835773-3836223
          Length = 273

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = +1

Query: 208 QNKIEEVRHQKEMG----ESSLRCDSSQKN 285
           +NK+EE R +KE G    E+ +RCD  +KN
Sbjct: 242 ENKMEEKRREKERGKNKREAEMRCDGEKKN 271


>02_02_0330 +
           9010814-9010884,9010991-9011123,9011204-9011252,
           9011822-9011868
          Length = 99

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 197 LHVTKTKLKRYVIKKRWAKAVSAVIALKRMGAKFEDVHEECGSKNGE 337
           LH++ + +   +IK R+ K  S ++ L  +G K  D HE+  S++ E
Sbjct: 37  LHISSSVMPTEIIK-RYFKEKSCLLDLMELGNKSSDCHEQRISRDTE 82


>08_01_0133 +
           1062365-1063057,1063210-1063318,1063914-1064005,
           1064399-1064560,1064718-1064834,1065029-1065127
          Length = 423

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -3

Query: 198 SSVQSADCINQGWVSVADAWRXGSSLSFTSSFPMKSWVV 82
           SS  S+D  +  W S +D+WR  SS S  SS P K  VV
Sbjct: 126 SSSSSSDSFSS-WSSSSDSWRSSSSSS--SSPPKKKKVV 161


>06_01_0294 + 2151131-2151529
          Length = 132

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 198 SSVQSADCINQGWVSVADAWRXGSSLSFTSSFPMKSWVVRYL 73
           SSV  ++ +    +S+ D    G SLS +SS P+ SW++ +L
Sbjct: 75  SSVNGSNQMPTSKISMIDR-SIGFSLSSSSSDPVSSWILAFL 115


>05_06_0174 - 26149663-26149885,26150353-26151701
          Length = 523

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 136 SPSISDTHPPLVDTIRTLHGATCYQNKIEEVRHQKEMGE 252
           +PS+S T PP + +IR+L   T  QN +      + +GE
Sbjct: 149 NPSLSGTLPPQLSSIRSLQVLTVSQNALIRGEVPQGIGE 187


>01_06_1236 +
           35613123-35613816,35615809-35615952,35616032-35616184,
           35616572-35616687,35616800-35616967,35617647-35617707,
           35617772-35617824,35618278-35618508,35618600-35618749
          Length = 589

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 143 ASATLTHPWLIQSALCTEL---HVTKTKLKRYVIKKRWAKAVSAVIALKRMGAKFEDVHE 313
           A   L HPWL  +     +    + K++LK++    R+ +    VIA      + ED+ E
Sbjct: 326 AKQVLEHPWLQNAKKAPNVPLGDIVKSRLKQFSRMNRFKRRALRVIADHLSAEEVEDIKE 385


>03_02_0289 -
           7115045-7115867,7116373-7116929,7117327-7117544,
           7117829-7117928,7118665-7118832
          Length = 621

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 297 NLAPILLRAITAETAFAHLFLMTYLFNFVLVTCSSVQSADCINQGWV 157
           N +P  +R++ +  A   + L +YL +F+L   S   + D  N GW+
Sbjct: 534 NQSPDSMRSLCSAFALVTVSLGSYLSSFILTLVSYFTTRD-DNPGWI 579


>03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216
          Length = 750

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 157 HPPLVDTIRTLHGATCYQNKIEEVRHQK 240
           HP  ++TI   H ATC+  K+ +   +K
Sbjct: 558 HPTAIETIVVWHVATCHLQKLVDESQRK 585


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,700,511
Number of Sequences: 37544
Number of extensions: 175462
Number of successful extensions: 426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)