Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I20
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81045-3|CAB02817.3|  280|Caenorhabditis elegans Hypothetical pr...    30   0.57 
U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U97404-1|AAB93310.1|  408|Caenorhabditis elegans Innexin protein...    27   3.0  
Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine...    27   4.0  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    27   4.0  
U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin re...    27   5.3  
AF067619-5|AAC17565.2|  317|Caenorhabditis elegans Hypothetical ...    26   7.0  
Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical pr...    26   9.3  

>Z81045-3|CAB02817.3|  280|Caenorhabditis elegans Hypothetical
           protein C36F7.4a protein.
          Length = 280

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -3

Query: 324 LPHSSWTSSNLAPILLRAITAETA-FAHLFLMTYLF 220
           + H+ +T+SNL P  LRAI  ++A F  L L+T ++
Sbjct: 239 ISHNHFTNSNLIPEELRAIQVDSASFPSLLLITIIY 274


>U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical
           protein D1044.8 protein.
          Length = 981

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 170 LIQSALCTELHVT-KTKLKRYVIKKRWAKAVSAVIALKRMGAKFEDVHEECGSKN 331
           LIQ     +L +T K K   +  KK WA  V  ++AL+ +  + + VH +    N
Sbjct: 542 LIQGCSLRDLIITMKEKKGNFEEKKIWAMVVQMMLALRYLHKEKQIVHRDLKPNN 596


>U97404-1|AAB93310.1|  408|Caenorhabditis elegans Innexin protein 12
           protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = -3

Query: 270 ITAETAFAHLFLMTYLFNFVLVTCSSVQSADCINQGWVSVADAWRXGSSLSFTSSFP--- 100
           IT+      LFL+  LF FVL+    +   D    G    +D W  G+    T +FP   
Sbjct: 198 ITSYLFMKALFLINVLFQFVLL--KRMLGVDSYFWGAEVTSDLW-SGNEWPETGNFPRVT 254

Query: 99  MKSWVVRYL*RLHRSDLATV 40
           M  + VR L  +H+  +  V
Sbjct: 255 MCEYEVRNLDNIHKHSVQCV 274


>Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical
           protein K01G5.5 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 160 PPLVDTI-RTLHGATCYQNKIEEVRHQKEMGESSLRCDS 273
           PPL+  + R L   T Y+NK  E    ++MG  +  C+S
Sbjct: 172 PPLISAVKRQLRIRTVYENKFIEYDPAQQMGIFNCICES 210


>Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical
           protein R06A4.10b protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 360 GTIYGVYFSPFLLPHSSWTSSNLAPILLRAITAETAFAHLFLMTYLFNFVLVT 202
           G+   + F    +P S  T+ NLA I    + A      +FL+T+LF FVL +
Sbjct: 441 GSFDSMMFRQIEVPVSPRTARNLAEIEYDWLAA--LLERIFLITFLFIFVLTS 491


>Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical
           protein R06A4.10a protein.
          Length = 514

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 360 GTIYGVYFSPFLLPHSSWTSSNLAPILLRAITAETAFAHLFLMTYLFNFVLVT 202
           G+   + F    +P S  T+ NLA I    + A      +FL+T+LF FVL +
Sbjct: 444 GSFDSMMFRQIEVPVSPRTARNLAEIEYDWLAA--LLERIFLITFLFIFVLTS 494


>AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine
           receptor alternativevariant b protein.
          Length = 459

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 360 GTIYGVYFSPFLLPHSSWTSSNLAPILLRAITAETAFAHLFLMTYLFNFVLVT 202
           G+   + F    +P S  T+ NLA I    + A      +FL+T+LF FVL +
Sbjct: 389 GSFDSMMFRQIEVPVSPRTARNLAEIEYDWLAA--LLERIFLITFLFIFVLTS 439


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
           receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 360 GTIYGVYFSPFLLPHSSWTSSNLAPILLRAITAETAFAHLFLMTYLFNFVLVT 202
           G+   + F    +P S  T+ NLA I    + A      +FL+T+LF FVL +
Sbjct: 483 GSFDSMMFRQIEVPVSPRTARNLAEIEYDWLAA--LLERIFLITFLFIFVLTS 533


>U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical
           protein W09C3.2 protein.
          Length = 460

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 217 IEEVRHQKEMGESSLRCDSSQK 282
           +E+  HQK +GE S R  SS+K
Sbjct: 137 LEQKSHQKNVGEGSKRTSSSRK 158


>AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin
           related protein 2 protein.
          Length = 654

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -3

Query: 354 IYGVYFSPFL-LPHSSWTSSNLAPILLRAITAETAFAHLFLMTY--LFNFVLVTCSS 193
           +Y +  S  L +    WTSS+ A     AI+   A    F+ TY  L N  L+ C +
Sbjct: 65  VYNISISSMLEIARYEWTSSDEARTNCAAISQTPASCENFIRTYFELTNDTLILCGT 121


>AF067619-5|AAC17565.2|  317|Caenorhabditis elegans Hypothetical
           protein K03E5.1 protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 136 SPSISDTHPPLVDTIRTLH 192
           SP+  D +PP +D +R +H
Sbjct: 78  SPNFPDRYPPNIDCVRVIH 96


>Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical
           protein T13H5.8 protein.
          Length = 566

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 354 IYGVYFSPFLLPHSSWTSSNLAPILLRAITAETAFAHLFLMTYLF 220
           I G  +S   +PH SW S     IL  +     AF  LF++  LF
Sbjct: 414 IGGAIYSLLYVPHKSWRSW----ILETSANGVYAFGFLFMLPQLF 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,165,207
Number of Sequences: 27780
Number of extensions: 149454
Number of successful extensions: 397
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)