Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I19
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 116 9e-28
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 116 9e-28
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 116 9e-28
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 46 1e-06
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 41 5e-05
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 2.1
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 25 3.7
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 25 3.7
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 24 4.8
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 4.8
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 23 8.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 23 8.5
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 23 8.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 116 bits (279), Expect = 9e-28
Identities = 64/102 (62%), Positives = 75/102 (73%)
Frame = +1
Query: 10 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVRFCPCVTSL 189
L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V F P +
Sbjct: 226 LLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVT- 284
Query: 190 LEVKSVGNCTHRRLYRGSLYPGEHMLVVKRQKNVSVKELRRG 315
EVKSV H L G PG++ V KNVSVK++RRG
Sbjct: 285 TEVKSV-EMHHESLDAG--LPGDN--VGFNVKNVSVKDIRRG 321
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 116 bits (279), Expect = 9e-28
Identities = 64/102 (62%), Positives = 75/102 (73%)
Frame = +1
Query: 10 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVRFCPCVTSL 189
L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V F P +
Sbjct: 226 LLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVT- 284
Query: 190 LEVKSVGNCTHRRLYRGSLYPGEHMLVVKRQKNVSVKELRRG 315
EVKSV H L G PG++ V KNVSVK++RRG
Sbjct: 285 TEVKSV-EMHHESLDAG--LPGDN--VGFNVKNVSVKDIRRG 321
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 116 bits (279), Expect = 9e-28
Identities = 64/102 (62%), Positives = 75/102 (73%)
Frame = +1
Query: 10 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVRFCPCVTSL 189
L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V F P +
Sbjct: 226 LLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVT- 284
Query: 190 LEVKSVGNCTHRRLYRGSLYPGEHMLVVKRQKNVSVKELRRG 315
EVKSV H L G PG++ V KNVSVK++RRG
Sbjct: 285 TEVKSV-EMHHESLDAG--LPGDN--VGFNVKNVSVKDIRRG 321
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 46.0 bits (104), Expect = 1e-06
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 10 LIEALDAILP-PARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVV 162
L+EA+D+ + P R TD + ++DV+ I G GTV GRVE G LK G +
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEI 285
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 40.7 bits (91), Expect = 5e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +1
Query: 10 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVV 162
L+ ALD ++PP +P K LRL + DVY+ TV GRVE G ++ V+
Sbjct: 387 LLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVL 436
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 2.1
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 200 LTSSSDVTQGQKRT-TVPGFRIPVSTLPTGTVPIPPILYTSC 78
L SSS V K T TV + VST TGTV +P +C
Sbjct: 83 LLSSSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 24.6 bits (51), Expect = 3.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 268 PTCAHPGTSFLC 233
P C HPGTS +C
Sbjct: 347 PFCVHPGTSRVC 358
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 71 FPCKTYTKSAVLEQYPW 121
FPCK S L QYP+
Sbjct: 173 FPCKASAHSVPLSQYPY 189
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 24.2 bits (50), Expect = 4.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 182 HHYLKSSPLETAPTGGSTEEACTRVSTCWLSSV 280
+ +LKSS LE A G ++ AC + WL +
Sbjct: 51 YSFLKSS-LENATLDGPSQVACLDTISVWLRRI 82
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.2 bits (50), Expect = 4.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 25 DAILPPARPTDKALRLPLQDVYKIGGIGTVPV 120
+ I P A+P+D+ L + + +GT+PV
Sbjct: 505 ERIEPEAKPSDETLTVRSSRDLSVHNVGTLPV 536
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 137 PVSTLPTGTVPIPPIL 90
P S LPT VP+P I+
Sbjct: 668 PTSALPTVPVPLPSII 683
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 23.4 bits (48), Expect = 8.5
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = -3
Query: 218 VQFPTDLTSSSDVTQGQKRTTVPGFRIPVSTLPTG--TVPIPP 96
+ P TSS+D TT S PTG T P+ P
Sbjct: 261 IPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTP 303
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.4 bits (48), Expect = 8.5
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -2
Query: 135 SFNSTHGYCSNTADFVYVLQGKTESLVSGASRRKDGVEGLNKA 7
+F GY ++ +L+ T + V ++ G+EG KA
Sbjct: 97 NFTQEDGYVASQLTIAEMLKSGTTTFVEALFAQRYGIEGAVKA 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,193
Number of Sequences: 5004
Number of extensions: 27884
Number of successful extensions: 83
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -