Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I18
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 26 1.5
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 1.5
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 25 2.5
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 25 2.5
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 25 3.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 4.4
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 4.4
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 24 5.9
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 24 5.9
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 5.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 5.9
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 24 7.8
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 1.5
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 137 KQPVVEASDGD--EAVEGEETDKEPDAGSDA 223
KQP V +SDGD + E EE D+ P+ S +
Sbjct: 238 KQPDVASSDGDFSDEPESEERDEVPELVSSS 268
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 1.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 260 CVHCKDKSATFAGYSKHLLSSKHRAAMS 343
C C K + YS H+ S KHR +S
Sbjct: 72 CEVCNKKFYSEGAYSSHMASKKHRDNLS 99
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 2.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 152 EASDGDEAVEGEETDKEPD 208
EASD DE+V+ EE ++E D
Sbjct: 204 EASDEDESVDLEEDEEEED 222
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 2.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 273 RIKAPPSPGTRNIYCQ 320
R+K P+PG RNI C+
Sbjct: 21 RLKRNPNPGLRNILCR 36
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 25.0 bits (52), Expect = 3.4
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 318 DSRCFEYPAKVALLSLQCTQ 259
++RCF Y +K +++L+C Q
Sbjct: 20 ETRCFHYHSKADVVALRCGQ 39
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.6 bits (51), Expect = 4.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 243 LTLISSVYIARIKAPPSPGTRNIYCQAS 326
LTL+ SV + R APP +IYC S
Sbjct: 1332 LTLLDSVLVQRASAPPI----DIYCPGS 1355
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 24.6 bits (51), Expect = 4.4
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 182 GEETDKEPDA-GSDALLPRPRSYVNLICVHCKDK 280
GE T D D++LP RS VN +H KDK
Sbjct: 32 GELTSLSQDTIDRDSVLPVARSLVNNNLLHHKDK 65
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 24.2 bits (50), Expect = 5.9
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -2
Query: 262 TDEINVRTRTWQKCI*TSVRFLVSFFSFYSFITV 161
TD++N+ TW+ + T++ F++ F + F ++
Sbjct: 144 TDDVNLPVNTWRTWVLTTI-FVIVFAAVNQFFSL 176
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.2 bits (50), Expect = 5.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 201 NLTLVQMHFCHVRVLTLISSVYIARIKAPPS 293
+L +Q+H R ISSV + +K+PP+
Sbjct: 501 HLIFLQIHLYVHRYAASISSVPFSHVKSPPT 531
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 5.9
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = +2
Query: 221 ALLPRPRSYVNLICVHCKDK------SATFAGYSKHLLSSKHR 331
AL P R V + C C ++ TF + HLLSS H+
Sbjct: 575 ALNPAERMTVRICCHDCINEYFTAGPGFTFGNFHIHLLSSSHQ 617
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 5.9
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -3
Query: 300 YPAKVALLSLQCT 262
YP+++ LLSL+CT
Sbjct: 1742 YPSQITLLSLRCT 1754
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 23.8 bits (49), Expect = 7.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 260 CVHCKDKSATFAGYSKHLLSSKHR 331
C +C++K F + H+ SS+HR
Sbjct: 499 CENCREK---FDNFESHIRSSRHR 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,811
Number of Sequences: 5004
Number of extensions: 14487
Number of successful extensions: 56
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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