Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I18
(347 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0332 - 2398683-2399316,2399933-2399983,2400455-2400528,240... 33 0.062
03_05_0796 + 27787401-27788831 31 0.19
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6... 30 0.57
01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519 30 0.57
08_01_1026 - 10366534-10368021,10368505-10368525 27 4.0
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087... 27 4.0
05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062 26 7.1
05_01_0317 - 2481308-2481350,2481611-2481687,2481765-2481831,248... 26 7.1
04_01_0198 + 2357337-2357339,2357729-2357748,2358324-2358810,235... 26 9.3
03_05_0787 + 27696347-27696708,27696851-27696857,27697066-276973... 26 9.3
01_01_1079 - 8491955-8492755 26 9.3
>06_01_0332 -
2398683-2399316,2399933-2399983,2400455-2400528,
2400685-2400782,2400874-2400956,2401323-2401582
Length = 399
Score = 33.1 bits (72), Expect = 0.062
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +2
Query: 137 KQPVVEASDGDEAVEGEETDKEPDAGSDALLPRPRSYVNLICVHCKDKSATFAGY 301
+QPVVE DG AV + D + DA SD P P S V D++A A Y
Sbjct: 325 RQPVVEGDDGQLAVVSGD-DADADADSDVKEPPPESEYGE--VFASDEAAAAAAY 376
>03_05_0796 + 27787401-27788831
Length = 476
Score = 31.5 bits (68), Expect = 0.19
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 131 SPKQPVVEASDGDEAVEGEETDKEPDAGSDALLPR 235
SP+QP + G +A E EE D+ DA+ PR
Sbjct: 92 SPRQPALLDGSGGQAAEEEEDDEGSSDDDDAMAPR 126
>02_01_0001 -
3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
7538-7667,7753-8255
Length = 577
Score = 29.9 bits (64), Expect = 0.57
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 140 QPVVEASDGD-EAVEGEETDKEP-DAGSDALLPRPRSYVNLI--CVHCKDKSATFAGYSK 307
+PV E+++GD + V G+ D+ D DALL S+ C HC++ T+ K
Sbjct: 414 EPVPESNEGDVKIVVGKNLDQIVLDESKDALLEVCSSWKIYAPWCGHCQELEPTYNKLGK 473
Query: 308 HL 313
HL
Sbjct: 474 HL 475
>01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519
Length = 236
Score = 29.9 bits (64), Expect = 0.57
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 236 PRSYVNLICVHCKDKSATFAGYSKHLLSSKHR 331
PR+ NL C+ C+ A F Y + S HR
Sbjct: 29 PRNECNLFCIDCQAPEAAFCYYCRSCHHSSHR 60
>08_01_1026 - 10366534-10368021,10368505-10368525
Length = 502
Score = 27.1 bits (57), Expect = 4.0
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 155 ASDGDEAVEGEETDKEPDAGSDALLPRPRSYVNLICVHCKDKSATFAGYSKHLLSSKHRA 334
A+DG+ E D EP A R V +IC C K+ + HL KH++
Sbjct: 213 AADGEHGTVVVEVDGEPHA------MRRLDEVFIICDVCNVKAPSVTVMRSHLAGRKHKS 266
Query: 335 AMSA 346
+A
Sbjct: 267 MAAA 270
>01_07_0123 +
41206782-41206844,41207701-41207782,41208587-41208717,
41208758-41209147
Length = 221
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 140 QPVVEASDGDEAVEGEETDKEPD---AGSDA 223
+P++E D DE + +E DK+ D AG DA
Sbjct: 24 EPILEDDDDDEDDDDDEDDKDDDVEGAGGDA 54
>05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062
Length = 456
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 155 ASDGDEAVEGEETDKEPDAGSDALLPRPRSYV 250
A DG + GE D PD G+ P PR ++
Sbjct: 28 AVDGGDGGGGEAGDGGPDPGTPEADPAPRGWI 59
>05_01_0317 -
2481308-2481350,2481611-2481687,2481765-2481831,
2482756-2482878,2482968-2483087,2483557-2483642,
2483960-2484070,2484194-2484274,2484475-2484546,
2484631-2484809,2485257-2485485
Length = 395
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 149 VEASDGDEAVEGEETDKEPDA 211
++A DGDEAVE + D+ DA
Sbjct: 228 LDADDGDEAVEEGDEDQAADA 248
>04_01_0198 +
2357337-2357339,2357729-2357748,2358324-2358810,
2358977-2359387
Length = 306
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 235 TWQKCI*TSVRFLVSFFSFYSFI 167
TW C R LV F FYSFI
Sbjct: 7 TWPYCKFGPCRLLVGVFLFYSFI 29
>03_05_0787 +
27696347-27696708,27696851-27696857,27697066-27697371,
27697454-27697873
Length = 364
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 134 PKQPVVEASDGDEAVEGEETDKEP 205
P P+V+ D D+ E +E D +P
Sbjct: 268 PTNPIVDVEDSDDDGESDEDDFDP 291
>01_01_1079 - 8491955-8492755
Length = 266
Score = 25.8 bits (54), Expect = 9.3
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 134 PKQPVVEASDGDE-AVEGEETDKEPDAGSDALLPRPRSYVNLICVHC 271
P P +E+ GD AVE EE D LLP R CVHC
Sbjct: 170 PWFPYMESVLGDPVAVEEEEGDDGEVVAVLLLLPVLRRSSPTACVHC 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,777,588
Number of Sequences: 37544
Number of extensions: 107166
Number of successful extensions: 375
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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