Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I18
         (347 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69090-1|CAA48833.1| 1451|Homo sapiens 190kD protein protein.          29   4.0  
BC116183-1|AAI16184.1| 1589|Homo sapiens myomesin 1, 185kDa prot...    29   4.0  
AK125322-1|BAC86128.1| 1685|Homo sapiens protein ( Homo sapiens ...    29   4.0  
AJ621424-1|CAF18565.1| 1685|Homo sapiens myomesin 1 protein.           29   4.0  
AF390562-1|AAN40840.1| 1826|Homo sapiens TBP-associated factor R...    29   5.3  

>X69090-1|CAA48833.1| 1451|Homo sapiens 190kD protein protein.
          Length = 1451

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 292 EGGAFILAMYTDEINVRTRTWQKCI*TSVRF 200
           +GG+ IL  + D+  V T +W +C  T V+F
Sbjct: 400 DGGSPILGYFIDKCEVGTDSWSQCNDTPVKF 430


>BC116183-1|AAI16184.1| 1589|Homo sapiens myomesin 1, 185kDa
           protein.
          Length = 1589

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 292 EGGAFILAMYTDEINVRTRTWQKCI*TSVRF 200
           +GG+ IL  + D+  V T +W +C  T V+F
Sbjct: 536 DGGSPILGYFIDKCEVGTDSWSQCNDTPVKF 566


>AK125322-1|BAC86128.1| 1685|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43332 fis, clone NT2RI3006340, highly  similar
           to Myomesin 1. ).
          Length = 1685

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 292 EGGAFILAMYTDEINVRTRTWQKCI*TSVRF 200
           +GG+ IL  + D+  V T +W +C  T V+F
Sbjct: 536 DGGSPILGYFIDKCEVGTDSWSQCNDTPVKF 566


>AJ621424-1|CAF18565.1| 1685|Homo sapiens myomesin 1 protein.
          Length = 1685

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 292 EGGAFILAMYTDEINVRTRTWQKCI*TSVRF 200
           +GG+ IL  + D+  V T +W +C  T V+F
Sbjct: 536 DGGSPILGYFIDKCEVGTDSWSQCNDTPVKF 566


>AF390562-1|AAN40840.1| 1826|Homo sapiens TBP-associated factor RNA
            polymerase 1-like protein.
          Length = 1826

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 134  PKQPVVEASDGDEAVEGEETDKEPDA 211
            PK P  E  DGD A E E T ++P+A
Sbjct: 1732 PKPPAPEGGDGDLADEEEGTVQQPEA 1757


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,874,544
Number of Sequences: 237096
Number of extensions: 567132
Number of successful extensions: 2057
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2053
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)