Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I18
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    31   0.23 
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    31   0.23 
Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc ...    26   8.5  

>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 134 PKQPVVEASDGDEAVEGEETDKEPDAGSD 220
           PK+P  +ASD DE  + E +D+E D  S+
Sbjct: 403 PKKPATKASDADEDDDEESSDEESDEESE 431


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 134 PKQPVVEASDGDEAVEGEETDKEPDAGSD 220
           PK+P  +ASD DE  + E +D+E D  S+
Sbjct: 403 PKKPATKASDADEDDDEESSDEESDEESE 431


>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 137 KQPVVEASDGDEAVEGEETDKEPD 208
           K+PVV ASD DE VE  E + + D
Sbjct: 318 KKPVVVASDDDEVVEDSEGELQID 341


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 170 EAVEGEETDKEPDAGSDALLPRPRSYVNLICVHCKDK 280
           E  E  E+D E     + +L R  S+  L C+ C D+
Sbjct: 787 EEEEKSESDGEEKVVKEGILKRSTSFSQLNCMKCDDE 823


>Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical
           protein M04B2.1 protein.
          Length = 870

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 254 LICVHCKDKSATFAGYSKHLLSS 322
           L C  C+D+  T+ G  +HL+ S
Sbjct: 753 LACSRCRDRFWTYEGLERHLVMS 775


>AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc
           finger protein protein.
          Length = 870

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 254 LICVHCKDKSATFAGYSKHLLSS 322
           L C  C+D+  T+ G  +HL+ S
Sbjct: 753 LACSRCRDRFWTYEGLERHLVMS 775


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,331,612
Number of Sequences: 27780
Number of extensions: 87985
Number of successful extensions: 294
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)